A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.8
nTPM
Monaco:
148.3
nTPM
Schmiedel:
29.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.8
HPA sample
nTPM
Memory B-cell nTPM: 29.8
Samples: 6
Max nTPM: 40.8
Min nTPM: 18.4
P10809_1017
29.9
P10809_1025
40.8
P10809_1044
18.4
P10809_1063
26.5
P10809_1092
30.7
P10809_1105
32.2
Naive B-cell nTPM: 28.0
Samples: 6
Max nTPM: 33.6
Min nTPM: 18.3
P10809_1011
18.3
P10809_1029
22.7
P10809_1048
28.7
P10809_1067
32.4
P10809_1091
33.6
P10809_1104
32.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 83.9
Samples: 4
Max nTPM: 109.0
Min nTPM: 69.3
RHH5310_R3677
109.0
RHH5218_R3590
70.6
RHH5247_R3619
69.3
RHH5276_R3648
86.5
Naive B-cell nTPM: 70.7
Samples: 4
Max nTPM: 87.8
Min nTPM: 51.2
RHH5308_R3675
87.8
RHH5216_R3588
73.5
RHH5245_R3617
51.2
RHH5274_R3646
70.3
Non-switched memory B-cell nTPM: 80.9
Samples: 4
Max nTPM: 98.0
Min nTPM: 65.3
RHH5309_R3676
98.0
RHH5217_R3589
87.3
RHH5246_R3618
72.8
RHH5275_R3647
65.3
Plasmablast nTPM: 148.3
Samples: 4
Max nTPM: 172.7
Min nTPM: 132.2
RHH5312_R3679
153.5
RHH5220_R3592
172.7
RHH5249_R3621
134.7
RHH5278_R3650
132.2
Switched memory B-cell nTPM: 97.4
Samples: 4
Max nTPM: 122.7
Min nTPM: 81.8
RHH5311_R3678
122.7
RHH5219_R3591
96.7
RHH5248_R3620
81.8
RHH5277_R3649
88.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
Schmiedel sample id
TPM
Naive B-cell TPM: 29.7
Samples: 91
Max TPM: 49.7
Min TPM: 12.7
B_CELL_NAIVE_1
49.7
B_CELL_NAIVE_2
44.0
B_CELL_NAIVE_3
42.7
B_CELL_NAIVE_4
41.1
B_CELL_NAIVE_5
40.2
B_CELL_NAIVE_6
39.3
B_CELL_NAIVE_7
39.2
B_CELL_NAIVE_8
38.9
B_CELL_NAIVE_9
38.2
B_CELL_NAIVE_10
37.8
B_CELL_NAIVE_11
37.6
B_CELL_NAIVE_12
37.4
B_CELL_NAIVE_13
37.0
B_CELL_NAIVE_14
37.0
B_CELL_NAIVE_15
36.3
B_CELL_NAIVE_16
36.2
B_CELL_NAIVE_17
36.0
B_CELL_NAIVE_18
36.0
B_CELL_NAIVE_19
35.7
B_CELL_NAIVE_20
35.4
B_CELL_NAIVE_21
35.4
B_CELL_NAIVE_22
35.2
B_CELL_NAIVE_23
35.0
B_CELL_NAIVE_24
34.9
B_CELL_NAIVE_25
34.8
B_CELL_NAIVE_26
34.5
B_CELL_NAIVE_27
34.3
B_CELL_NAIVE_28
34.2
B_CELL_NAIVE_29
33.8
B_CELL_NAIVE_30
33.7
B_CELL_NAIVE_31
33.3
B_CELL_NAIVE_32
33.3
B_CELL_NAIVE_33
33.1
B_CELL_NAIVE_34
32.9
B_CELL_NAIVE_35
32.7
B_CELL_NAIVE_36
32.4
B_CELL_NAIVE_37
32.3
B_CELL_NAIVE_38
32.2
B_CELL_NAIVE_39
31.9
B_CELL_NAIVE_40
31.7
B_CELL_NAIVE_41
31.7
B_CELL_NAIVE_42
31.3
B_CELL_NAIVE_43
30.7
B_CELL_NAIVE_44
30.6
B_CELL_NAIVE_45
30.6
B_CELL_NAIVE_46
30.4
B_CELL_NAIVE_47
30.2
B_CELL_NAIVE_48
29.9
B_CELL_NAIVE_49
29.9
B_CELL_NAIVE_50
29.9
B_CELL_NAIVE_51
29.8
B_CELL_NAIVE_52
29.8
B_CELL_NAIVE_53
29.8
B_CELL_NAIVE_54
29.5
B_CELL_NAIVE_55
28.6
B_CELL_NAIVE_56
28.3
B_CELL_NAIVE_57
28.3
B_CELL_NAIVE_58
28.2
B_CELL_NAIVE_59
28.0
B_CELL_NAIVE_60
27.2
B_CELL_NAIVE_61
27.1
B_CELL_NAIVE_62
26.3
B_CELL_NAIVE_63
25.9
B_CELL_NAIVE_64
25.7
B_CELL_NAIVE_65
25.6
B_CELL_NAIVE_66
25.4
B_CELL_NAIVE_67
25.2
B_CELL_NAIVE_68
25.2
B_CELL_NAIVE_69
25.0
B_CELL_NAIVE_70
25.0
B_CELL_NAIVE_71
24.9
B_CELL_NAIVE_72
24.3
B_CELL_NAIVE_73
24.1
B_CELL_NAIVE_74
23.6
B_CELL_NAIVE_75
23.5
B_CELL_NAIVE_76
22.8
B_CELL_NAIVE_77
22.4
B_CELL_NAIVE_78
21.7
B_CELL_NAIVE_79
20.9
B_CELL_NAIVE_80
19.4
B_CELL_NAIVE_81
19.2
B_CELL_NAIVE_82
19.0
B_CELL_NAIVE_83
18.8
B_CELL_NAIVE_84
18.5
B_CELL_NAIVE_85
18.1
B_CELL_NAIVE_86
16.5
B_CELL_NAIVE_87
16.4
B_CELL_NAIVE_88
16.2
B_CELL_NAIVE_89
14.0
B_CELL_NAIVE_90
13.1
B_CELL_NAIVE_91
12.7
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The Human Protein Atlas project is funded
