SMARCA2
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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

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  • CELL LINE

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  • EVOLUTION

  • SMARCA2
EVOLUTIONARY OVARY Show tissue menu
BRAIN28 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM10 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE12 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CORPUS CALLOSUM DORSAL ROOT GANGLION ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
MOTOR AND PREFRONTAL CORTEX OCCIPITAL CORTEX OLFACTORY BULB PONS RETROSPLENIAL AND CINGULATE CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES PERICARDIUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Follicle cells: Medium
Ovarian stroma cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:136.3 nTPM
HPA:136.3 nTPM
GTEx:72.9 nTPM
FANTOM5:207.0 Scaled Tags Per Million
Mouse:87.7 nTPM
Rat:44.5 nTPM
OVARY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029981Antibody CAB037276
Follicle cells MediumMedium
Ovarian stroma cells MediumMedium



OVARY - PROTEINTALKS DB MS
Median intensity 3921
Sample Intensity
Ovary_01
4701
Ovary_02
3140

OVARY - MANN MS
Median intensity 27398636
Replicate Intensity
Ovary_01
31894367
Ovary_02
27398636
Ovary_03
26138244

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.3
overview
Female, age 64
Ovary sample 192
nTPM: 175.9
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 159.1
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 137.2
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 142.9
N/A
Female, age 16
Ovary sample 3663
nTPM: 90
N/A
Female, age 20
Ovary sample 3664
nTPM: 115.8
N/A
Female, age 32
Ovary sample 3665
nTPM: 133.3

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.9
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 72.9
Samples: 193

Max nTPM: 174.6
Min nTPM: 30.6
Std nTPM: 27.1
Median nTPM: 71.0
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 174.6
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 160.8
GTEX-1I1CD-2026-SM-GA91R 60-69 years, female 160.2
GTEX-14BIN-1426-SM-664NI 50-59 years, female 153.4
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 147.8
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 145.4
GTEX-16NPV-2326-SM-HL9UF 50-59 years, female 139.0
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 133.8
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 128.8
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 124.9
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 123.9
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 121.9
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 120.2
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 118.9
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 110.7
GTEX-P78B-1926-SM-3P616 40-49 years, female 109.6
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 109.5
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 106.8
GTEX-QVJO-3126-SM-COH22 60-69 years, female 106.3
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 105.3
GTEX-ZE7O-2226-SM-GNTC2 50-59 years, female 105.0
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 103.4
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 102.4
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 102.1
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 101.0
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 101.0
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 100.9
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 99.4
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 98.4
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 98.2
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 97.6
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 97.5
GTEX-13SLX-2426-SM-664OM 50-59 years, female 95.8
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 94.2
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 93.7
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 93.5
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 92.5
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 89.8
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 88.9
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 88.8
GTEX-183WM-1926-SM-72D5F 70-79 years, female 88.7
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 88.7
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 86.9
GTEX-RU72-2226-SM-46MUE 50-59 years, female 86.8
GTEX-13NZ8-2526-SM-H65ZM 60-69 years, female 86.4
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 86.2
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 86.1
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 85.6
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 85.4
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 85.1
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 84.8
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 84.2
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 84.0
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 82.9
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 82.6
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 82.5
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 82.3
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 82.2
GTEX-131XW-2726-SM-HL9U9 50-59 years, female 81.8
GTEX-18D9A-0826-SM-718C1 30-39 years, female 81.6
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 81.3
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 81.2
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 81.2
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 80.8
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 80.6
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 80.5
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 80.2
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 80.0
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 78.6
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 78.5
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 78.3
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 78.1
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 77.8
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 77.8
GTEX-13X6H-1026-SM-5MR8F 50-59 years, female 77.6
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 77.3
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 76.5
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 76.4
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 75.9
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 75.8
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 75.5
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 75.4
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 75.2
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 74.4
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 73.9
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 73.5
GTEX-Q734-0726-SM-48TZP 40-49 years, female 73.4
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 73.1
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 73.1
GTEX-11I78-1926-SM-59878 50-59 years, female 72.8
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 72.7
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 72.7
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 72.6
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 72.4
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 72.3
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 71.8
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 71.0
GTEX-S32W-1226-SM-4AD67 50-59 years, female 70.4
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 69.4
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 69.2
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 68.9
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 68.8
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 68.5
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 68.1
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 68.0
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 68.0
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 67.5
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 67.3
GTEX-QCQG-1426-SM-48U22 50-59 years, female 66.3
GTEX-15SHU-2726-SM-HAV2W 40-49 years, female 66.1
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 65.8
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 64.9
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 64.9
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 63.0
GTEX-S341-0726-SM-4AD5R 40-49 years, female 62.7
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 62.6
GTEX-1R9JW-1226-SM-F2I1P 30-39 years, female 61.9
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 61.5
GTEX-1NUQO-1726-SM-HK7A8 20-29 years, female 61.3
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 61.0
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 60.7
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 59.6
GTEX-17F9Y-2226-SM-HL9UK 70-79 years, female 59.5
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 59.3
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 59.1
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 58.6
GTEX-1MCYP-1426-SM-F2I3H 20-29 years, female 58.6
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 58.2
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 58.1
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 58.0
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 57.7
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 57.4
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 57.2
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 57.0
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 56.2
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 56.0
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 55.2
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 54.4
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 54.2
GTEX-WI4N-2526-SM-4M9QQ 40-49 years, female 54.2
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 53.6
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 53.2
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 53.0
GTEX-W5X1-2026-SM-GPRX9 40-49 years, female 52.9
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 52.5
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 52.1
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 52.1
GTEX-1399S-2126-SM-G8OM9 30-39 years, female 51.8
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 51.8
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 51.3
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 51.0
GTEX-145ME-1226-SM-5MR87 40-49 years, female 49.9
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 49.8
GTEX-14PKV-1226-SM-6871T 20-29 years, female 49.6
GTEX-15EOM-1526-SM-68723 20-29 years, female 49.6
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 49.5
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 49.5
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 48.9
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 48.7
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 48.6
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 48.5
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 48.4
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 48.3
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 47.8
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 46.7
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 46.7
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 45.5
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 44.6
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 44.4
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 44.4
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 44.0
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 43.5
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 41.7
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 41.1
GTEX-14JG6-0626-SM-68716 30-39 years, female 40.2
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 39.8
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 39.1
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 39.1
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 39.0
GTEX-1RNTQ-1726-SM-F2I39 20-29 years, female 38.2
GTEX-ZTPG-1926-SM-HAUZ1 20-29 years, female 38.2
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 37.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 37.7
GTEX-1IE54-2126-SM-GA8ZX 40-49 years, female 37.4
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 37.2
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 34.6
GTEX-R55G-1526-SM-48FER 40-49 years, female 33.6
GTEX-R45C-2526-SM-GRR28 60-69 years, female 33.5
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 33.3
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 33.2
GTEX-SE5C-0826-SM-HL9T7 40-49 years, female 32.9
GTEX-OHPN-1626-SM-GNTBJ 60-69 years, female 31.6
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 30.6
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OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

207.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 207.0
FF:10020-101D2 47,75,84 years, female 207.0

OVARY - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.7
Mouse sample Sample description nTPM
Ovary
nTPM: 87.7
Samples: 2

Max nTPM: 94.9
Min nTPM: 80.5
Sample A 80.5
Sample B 94.9

OVARY - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.5
Rat sample Sample description nTPM
Ovary
nTPM: 44.5
Samples: 2

Max nTPM: 45.0
Min nTPM: 44.0
Sample A 44.0
Sample A 45.0

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