A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
110.0
nTPM
Monaco:
202.7
nTPM
Schmiedel:
102.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.0
HPA sample
nTPM
Classical monocyte nTPM: 82.7
Samples: 6
Max nTPM: 114.6
Min nTPM: 53.4
P10809_1003
114.6
P10809_1020
99.0
P10809_1039
89.8
P10809_1058
61.2
P10809_1080
78.5
P10809_1107
53.4
Intermediate monocyte nTPM: 94.2
Samples: 6
Max nTPM: 119.5
Min nTPM: 62.5
P10809_1004
114.9
P10809_1023
104.3
P10809_1042
119.5
P10809_1061
86.6
P10809_1081
77.2
P10809_1108
62.5
Non-classical monocyte nTPM: 110.0
Samples: 5
Max nTPM: 153.2
Min nTPM: 75.5
P10809_1005
99.1
P10809_1053
141.0
P10809_1072
153.2
P10809_1082
81.1
P10809_1109
75.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
202.7
Monaco sample
nTPM
Classical monocyte nTPM: 167.4
Samples: 4
Max nTPM: 170.4
Min nTPM: 163.9
RHH5313_R3680
166.1
RHH5221_R3593
170.4
RHH5250_R3622
169.3
RHH5279_R3651
163.9
Intermediate monocyte nTPM: 164.1
Samples: 4
Max nTPM: 213.8
Min nTPM: 120.4
RHH5314_R3681
165.8
RHH5222_R3594
213.8
RHH5251_R3623
120.4
RHH5280_R3652
156.3
Non-classical monocyte nTPM: 202.7
Samples: 4
Max nTPM: 235.6
Min nTPM: 157.2
RHH5315_R3682
229.0
RHH5223_R3595
235.6
RHH5252_R3624
157.2
RHH5281_R3653
189.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.6
Schmiedel sample id
TPM
Classical monocyte TPM: 59.0
Samples: 91
Max TPM: 72.4
Min TPM: 44.4
MONOCYTES_1
72.4
MONOCYTES_2
72.0
MONOCYTES_3
71.6
MONOCYTES_4
71.6
MONOCYTES_5
70.0
MONOCYTES_6
69.5
MONOCYTES_7
68.8
MONOCYTES_8
68.8
MONOCYTES_9
68.4
MONOCYTES_10
68.1
MONOCYTES_11
67.6
MONOCYTES_12
67.1
MONOCYTES_13
66.9
MONOCYTES_14
66.4
MONOCYTES_15
65.5
MONOCYTES_16
64.4
MONOCYTES_17
64.2
MONOCYTES_18
63.8
MONOCYTES_19
63.5
MONOCYTES_20
63.4
MONOCYTES_21
63.4
MONOCYTES_22
63.3
MONOCYTES_23
63.3
MONOCYTES_24
63.2
MONOCYTES_25
62.9
MONOCYTES_26
62.8
MONOCYTES_27
62.8
MONOCYTES_28
62.6
MONOCYTES_29
62.3
MONOCYTES_30
62.2
MONOCYTES_31
62.1
MONOCYTES_32
62.0
MONOCYTES_33
61.7
MONOCYTES_34
61.6
MONOCYTES_35
61.5
MONOCYTES_36
61.1
MONOCYTES_37
60.8
MONOCYTES_38
60.6
MONOCYTES_39
60.5
MONOCYTES_40
60.4
MONOCYTES_41
60.3
MONOCYTES_42
60.1
MONOCYTES_43
59.8
MONOCYTES_44
59.8
MONOCYTES_45
59.6
MONOCYTES_46
59.6
MONOCYTES_47
59.1
MONOCYTES_48
59.1
MONOCYTES_49
58.9
MONOCYTES_50
58.7
MONOCYTES_51
58.4
MONOCYTES_52
58.1
MONOCYTES_53
56.8
MONOCYTES_54
56.6
MONOCYTES_55
56.4
MONOCYTES_56
56.2
MONOCYTES_57
56.1
MONOCYTES_58
55.8
MONOCYTES_59
55.8
MONOCYTES_60
55.7
MONOCYTES_61
55.1
MONOCYTES_62
54.9
MONOCYTES_63
54.9
MONOCYTES_64
54.8
MONOCYTES_65
54.7
MONOCYTES_66
54.6
MONOCYTES_67
54.5
MONOCYTES_68
54.5
MONOCYTES_69
54.5
MONOCYTES_70
54.4
MONOCYTES_71
53.8
MONOCYTES_72
53.8
MONOCYTES_73
53.6
MONOCYTES_74
53.3
MONOCYTES_75
53.2
MONOCYTES_76
53.1
MONOCYTES_77
53.1
MONOCYTES_78
52.9
MONOCYTES_79
52.8
MONOCYTES_80
52.8
MONOCYTES_81
51.8
MONOCYTES_82
50.8
MONOCYTES_83
50.4
MONOCYTES_84
49.9
MONOCYTES_85
49.4
MONOCYTES_86
49.3
MONOCYTES_87
48.6
MONOCYTES_88
48.6
MONOCYTES_89
46.8
MONOCYTES_90
45.9
MONOCYTES_91
44.4
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Non-classical monocyte TPM: 102.6
Samples: 90
Max TPM: 131.8
Min TPM: 75.2
M2_1
131.8
M2_2
131.0
M2_3
127.6
M2_4
127.0
M2_5
124.0
M2_6
121.7
M2_7
121.4
M2_8
120.1
M2_9
119.4
M2_10
118.5
M2_11
117.7
M2_12
117.4
M2_13
117.3
M2_14
116.2
M2_15
115.8
M2_16
115.3
M2_17
115.0
M2_18
113.8
M2_19
113.7
M2_20
111.3
M2_21
110.2
M2_22
109.9
M2_23
109.2
M2_24
108.3
M2_25
107.6
M2_26
107.3
M2_27
107.1
M2_28
107.0
M2_29
106.8
M2_30
106.8
M2_31
106.5
M2_32
106.4
M2_33
106.0
M2_34
105.9
M2_35
104.8
M2_36
104.3
M2_37
104.1
M2_38
103.5
M2_39
103.2
M2_40
103.2
M2_41
103.1
M2_42
102.8
M2_43
102.7
M2_44
102.7
M2_45
102.2
M2_46
102.1
M2_47
100.6
M2_48
99.7
M2_49
99.6
M2_50
99.4
M2_51
99.4
M2_52
99.3
M2_53
99.3
M2_54
98.8
M2_55
98.4
M2_56
98.4
M2_57
97.6
M2_58
97.5
M2_59
97.0
M2_60
96.8
M2_61
96.6
M2_62
96.4
M2_63
95.9
M2_64
95.2
M2_65
94.9
M2_66
94.4
M2_67
94.3
M2_68
94.1
M2_69
93.4
M2_70
93.1
M2_71
92.9
M2_72
92.8
M2_73
92.7
M2_74
92.2
M2_75
92.0
M2_76
90.4
M2_77
90.4
M2_78
90.2
M2_79
89.9
M2_80
89.5
M2_81
88.9
M2_82
88.3
M2_83
88.0
M2_84
87.3
M2_85
86.8
M2_86
86.7
M2_87
85.7
M2_88
85.6
M2_89
76.1
M2_90
75.2
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