CLDND1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • CLDND1
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:342.6 nTPM
GTEx:349.8 nTPM
FANTOM5:209.8 Scaled Tags Per Million
Macaque:141.2 nTPM
Pig:57.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.6
Sample id Sample description nTPM
Putamen
nTPM: 342.6
2482 Female, age 94, left hemisphere 466.8
1829 Male, age 74, unknown 436.3
2489 Female, age 72, unknown 352.5
2647 Male, age 75, left hemisphere 350.9
1937 Female, age 91, right hemisphere 343.4
2466 Female, age 79, unknown 290.0
1838 Male, age 80, right hemisphere 158.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.8
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 349.8
Samples: 254

Max nTPM: 1285.0
Min nTPM: 79.6
Std nTPM: 154.8
Median nTPM: 326.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1285.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 906.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 854.7
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 820.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 771.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 751.1
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 750.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 718.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 701.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 679.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 677.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 652.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 645.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 626.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 622.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 621.1
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 598.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 593.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 572.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 563.0
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 556.3
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 549.7
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 546.3
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 530.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 527.8
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 526.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 525.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 521.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 521.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 514.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 512.4
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 510.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 506.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 504.2
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 503.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 501.8
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 497.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 485.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 485.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 484.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 481.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 476.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 475.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 473.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 473.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 462.2
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 461.5
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 460.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 455.7
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 451.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 451.8
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 451.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 446.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 436.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 436.7
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 434.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 428.5
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 426.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 426.3
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 421.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 418.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 418.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 417.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 415.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 413.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 413.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 410.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 409.5
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 409.2
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 406.4
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 403.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 401.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 401.2
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 398.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 397.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 396.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 395.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 394.7
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 394.7
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 390.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 390.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 389.9
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 388.5
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 388.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 383.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 382.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 380.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 379.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 378.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 377.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 377.8
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 376.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 376.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 375.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 375.8
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 372.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 371.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 367.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 364.3
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 362.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 356.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 355.7
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 354.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 350.7
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 350.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 347.7
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 347.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 345.1
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 343.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 342.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 340.6
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 340.4
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 340.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 340.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 339.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 338.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 335.0
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 334.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 333.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 332.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 331.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 330.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 329.7
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 329.7
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 327.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 326.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 326.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 326.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 325.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 325.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 324.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 324.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 319.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 319.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 318.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 316.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 314.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 312.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 308.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 307.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 304.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 302.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 302.6
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 299.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 299.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 296.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 296.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 295.5
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 294.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 293.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 293.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 291.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 290.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 290.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 286.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 285.5
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 284.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 284.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 283.8
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 283.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 280.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 280.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 278.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 274.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 274.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 274.0
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 273.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 272.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 270.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 268.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 267.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 266.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 265.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 264.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 264.4
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 263.3
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 261.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 260.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 260.7
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 260.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 260.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 257.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 253.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 253.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 251.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 250.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 249.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 249.1
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 249.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 248.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 244.3
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 243.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 242.6
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 242.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 237.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 237.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 234.5
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 234.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 232.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 230.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 230.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 229.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 227.1
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 224.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 222.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 222.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 221.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 221.3
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 220.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 220.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 219.9
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 219.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 216.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 216.6
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 216.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 214.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 214.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 213.5
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 210.0
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 207.9
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 207.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 205.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 204.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 203.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 201.5
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 193.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 190.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 189.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 179.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 178.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 177.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 176.7
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 174.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 173.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 172.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 171.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 169.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 167.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 161.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 161.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 160.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 160.3
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 153.4
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 151.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 151.3
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 143.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 143.6
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 142.6
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 138.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 132.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 131.3
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 126.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 100.2
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 79.6
Show allShow less

PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

209.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 209.8
FF:10176-103C5 60 years, female 209.8

PUTAMEN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.2
Macaque sample Sample description nTPM
Putamen
nTPM: 141.2
Samples: 2

Max nTPM: 163.3
Min nTPM: 119.1
Sample A 119.1
Sample B 163.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.9
Pig sample Sample description nTPM
Putamen
nTPM: 57.9
Samples: 3

Max nTPM: 65.6
Min nTPM: 47.6
Sample B Female 47.6
Sample C Male 60.5
Sample D Male 65.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.