A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
91.3
nTPM
Monaco:
112.2
nTPM
Schmiedel:
42.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.3
HPA sample
nTPM
Classical monocyte nTPM: 91.3
Samples: 6
Max nTPM: 152.4
Min nTPM: 55.8
P10809_1003
55.8
P10809_1020
114.5
P10809_1039
152.4
P10809_1058
71.3
P10809_1080
81.3
P10809_1107
72.7
Intermediate monocyte nTPM: 55.6
Samples: 6
Max nTPM: 76.5
Min nTPM: 42.5
P10809_1004
57.5
P10809_1023
76.5
P10809_1042
58.4
P10809_1061
49.1
P10809_1081
49.3
P10809_1108
42.5
Non-classical monocyte nTPM: 57.0
Samples: 5
Max nTPM: 98.1
Min nTPM: 34.7
P10809_1005
34.7
P10809_1053
98.1
P10809_1072
50.3
P10809_1082
50.0
P10809_1109
51.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.2
Monaco sample
nTPM
Classical monocyte nTPM: 112.2
Samples: 4
Max nTPM: 126.6
Min nTPM: 95.4
RHH5313_R3680
95.4
RHH5221_R3593
126.6
RHH5250_R3622
108.7
RHH5279_R3651
118.0
Intermediate monocyte nTPM: 75.1
Samples: 4
Max nTPM: 82.8
Min nTPM: 66.4
RHH5314_R3681
66.4
RHH5222_R3594
74.0
RHH5251_R3623
82.8
RHH5280_R3652
77.1
Non-classical monocyte nTPM: 73.6
Samples: 4
Max nTPM: 88.0
Min nTPM: 64.0
RHH5315_R3682
64.0
RHH5223_R3595
71.9
RHH5252_R3624
70.3
RHH5281_R3653
88.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.0
Schmiedel sample id
TPM
Classical monocyte TPM: 38.5
Samples: 91
Max TPM: 58.2
Min TPM: 28.2
MONOCYTES_1
58.2
MONOCYTES_2
54.5
MONOCYTES_3
50.8
MONOCYTES_4
49.5
MONOCYTES_5
48.7
MONOCYTES_6
47.2
MONOCYTES_7
46.9
MONOCYTES_8
45.6
MONOCYTES_9
45.6
MONOCYTES_10
45.2
MONOCYTES_11
45.2
MONOCYTES_12
44.6
MONOCYTES_13
44.6
MONOCYTES_14
44.5
MONOCYTES_15
44.4
MONOCYTES_16
44.4
MONOCYTES_17
44.3
MONOCYTES_18
43.8
MONOCYTES_19
43.3
MONOCYTES_20
42.8
MONOCYTES_21
42.1
MONOCYTES_22
42.0
MONOCYTES_23
41.7
MONOCYTES_24
41.6
MONOCYTES_25
41.4
MONOCYTES_26
41.3
MONOCYTES_27
40.8
MONOCYTES_28
40.7
MONOCYTES_29
40.7
MONOCYTES_30
40.1
MONOCYTES_31
39.9
MONOCYTES_32
39.6
MONOCYTES_33
39.4
MONOCYTES_34
39.4
MONOCYTES_35
39.3
MONOCYTES_36
39.3
MONOCYTES_37
39.0
MONOCYTES_38
38.6
MONOCYTES_39
38.4
MONOCYTES_40
38.4
MONOCYTES_41
38.3
MONOCYTES_42
38.2
MONOCYTES_43
38.1
MONOCYTES_44
38.0
MONOCYTES_45
37.8
MONOCYTES_46
37.5
MONOCYTES_47
37.4
MONOCYTES_48
37.4
MONOCYTES_49
37.4
MONOCYTES_50
37.2
MONOCYTES_51
37.0
MONOCYTES_52
37.0
MONOCYTES_53
36.9
MONOCYTES_54
36.7
MONOCYTES_55
36.4
MONOCYTES_56
36.4
MONOCYTES_57
36.4
MONOCYTES_58
36.2
MONOCYTES_59
36.2
MONOCYTES_60
36.0
MONOCYTES_61
35.7
MONOCYTES_62
35.7
MONOCYTES_63
35.7
MONOCYTES_64
35.4
MONOCYTES_65
35.3
MONOCYTES_66
35.2
MONOCYTES_67
35.1
MONOCYTES_68
34.9
MONOCYTES_69
34.6
MONOCYTES_70
34.4
MONOCYTES_71
34.3
MONOCYTES_72
33.9
MONOCYTES_73
33.7
MONOCYTES_74
33.6
MONOCYTES_75
33.4
MONOCYTES_76
32.9
MONOCYTES_77
32.8
MONOCYTES_78
32.7
MONOCYTES_79
32.7
MONOCYTES_80
32.4
MONOCYTES_81
32.4
MONOCYTES_82
32.1
MONOCYTES_83
32.0
MONOCYTES_84
31.8
MONOCYTES_85
31.1
MONOCYTES_86
30.6
MONOCYTES_87
29.7
MONOCYTES_88
29.7
MONOCYTES_89
29.0
MONOCYTES_90
28.6
MONOCYTES_91
28.2
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Non-classical monocyte TPM: 42.0
Samples: 90
Max TPM: 60.5
Min TPM: 23.0
M2_1
60.5
M2_2
60.0
M2_3
58.7
M2_4
56.5
M2_5
56.2
M2_6
56.1
M2_7
55.6
M2_8
54.1
M2_9
53.5
M2_10
53.1
M2_11
53.0
M2_12
51.6
M2_13
51.4
M2_14
51.3
M2_15
50.9
M2_16
50.8
M2_17
50.5
M2_18
49.5
M2_19
48.8
M2_20
48.6
M2_21
48.6
M2_22
48.4
M2_23
48.0
M2_24
46.3
M2_25
46.2
M2_26
45.8
M2_27
45.3
M2_28
45.2
M2_29
45.0
M2_30
44.7
M2_31
44.6
M2_32
44.2
M2_33
43.8
M2_34
43.8
M2_35
43.7
M2_36
43.4
M2_37
43.3
M2_38
43.2
M2_39
43.0
M2_40
42.9
M2_41
42.8
M2_42
42.7
M2_43
42.5
M2_44
41.9
M2_45
41.7
M2_46
41.5
M2_47
41.3
M2_48
41.0
M2_49
40.8
M2_50
40.7
M2_51
40.4
M2_52
40.3
M2_53
40.2
M2_54
39.4
M2_55
39.4
M2_56
39.0
M2_57
38.8
M2_58
38.5
M2_59
38.3
M2_60
38.0
M2_61
37.9
M2_62
37.4
M2_63
37.0
M2_64
36.9
M2_65
36.6
M2_66
36.1
M2_67
36.0
M2_68
35.9
M2_69
35.5
M2_70
35.3
M2_71
34.9
M2_72
34.7
M2_73
34.3
M2_74
33.9
M2_75
33.8
M2_76
33.8
M2_77
33.5
M2_78
33.1
M2_79
33.0
M2_80
32.9
M2_81
32.7
M2_82
32.2
M2_83
31.4
M2_84
31.2
M2_85
31.1
M2_86
30.1
M2_87
29.0
M2_88
27.6
M2_89
26.3
M2_90
23.0
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