A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.2
nTPM
Monaco:
37.1
nTPM
Schmiedel:
21.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.2
HPA sample
nTPM
NK-cell nTPM: 2.2
Samples: 6
Max nTPM: 5.3
Min nTPM: 0.0
P10809_1013
3.8
P10809_1033
3.8
P10809_1052
5.3
P10809_1071
0.0
P10809_1093
0.3
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
Monaco sample
nTPM
NK-cell nTPM: 37.2
Samples: 4
Max nTPM: 52.1
Min nTPM: 28.5
RHH5316_R3683
34.0
RHH5224_R3596
34.0
RHH5253_R3625
52.1
RHH5282_R3654
28.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.0
Schmiedel sample id
TPM
NK-cell TPM: 21.0
Samples: 90
Max TPM: 32.1
Min TPM: 13.0
NK_1
32.1
NK_2
32.0
NK_3
31.9
NK_4
29.2
NK_5
28.6
NK_6
27.1
NK_7
26.8
NK_8
26.7
NK_9
26.5
NK_10
25.7
NK_11
25.6
NK_12
25.3
NK_13
25.1
NK_14
25.1
NK_15
24.7
NK_16
24.2
NK_17
24.0
NK_18
24.0
NK_19
24.0
NK_20
23.6
NK_21
23.5
NK_22
23.4
NK_23
23.4
NK_24
23.3
NK_25
23.2
NK_26
23.0
NK_27
22.9
NK_28
22.8
NK_29
22.8
NK_30
22.7
NK_31
22.5
NK_32
22.4
NK_33
22.1
NK_34
22.1
NK_35
21.9
NK_36
21.8
NK_37
21.5
NK_38
21.3
NK_39
21.3
NK_40
21.1
NK_41
21.1
NK_42
20.9
NK_43
20.9
NK_44
20.5
NK_45
20.5
NK_46
20.4
NK_47
20.4
NK_48
20.1
NK_49
20.1
NK_50
20.0
NK_51
20.0
NK_52
19.8
NK_53
19.5
NK_54
19.5
NK_55
19.5
NK_56
19.4
NK_57
19.1
NK_58
19.1
NK_59
19.0
NK_60
19.0
NK_61
19.0
NK_62
19.0
NK_63
18.8
NK_64
18.8
NK_65
18.7
NK_66
18.7
NK_67
18.6
NK_68
18.6
NK_69
18.5
NK_70
18.4
NK_71
18.3
NK_72
18.1
NK_73
18.0
NK_74
17.7
NK_75
17.5
NK_76
17.1
NK_77
16.8
NK_78
16.7
NK_79
16.7
NK_80
16.0
NK_81
15.9
NK_82
15.8
NK_83
15.5
NK_84
15.3
NK_85
15.2
NK_86
14.7
NK_87
14.4
NK_88
13.4
NK_89
13.4
NK_90
13.0
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