A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
43.6
nTPM
Schmiedel:
24.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
NK-cell nTPM: 9.6
Samples: 6
Max nTPM: 16.2
Min nTPM: 0.0
P10809_1013
10.5
P10809_1033
8.3
P10809_1052
12.1
P10809_1071
10.3
P10809_1093
0.0
P10809_1103
16.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.6
Monaco sample
nTPM
NK-cell nTPM: 43.6
Samples: 4
Max nTPM: 55.9
Min nTPM: 32.7
RHH5316_R3683
42.6
RHH5224_R3596
55.9
RHH5253_R3625
32.7
RHH5282_R3654
43.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
Schmiedel sample id
TPM
NK-cell TPM: 24.9
Samples: 90
Max TPM: 36.2
Min TPM: 12.2
NK_1
36.2
NK_2
34.9
NK_3
34.8
NK_4
34.3
NK_5
34.1
NK_6
34.1
NK_7
33.8
NK_8
33.5
NK_9
31.6
NK_10
31.1
NK_11
30.9
NK_12
30.6
NK_13
30.3
NK_14
29.8
NK_15
29.7
NK_16
29.7
NK_17
29.6
NK_18
29.5
NK_19
29.4
NK_20
29.2
NK_21
29.0
NK_22
28.9
NK_23
28.7
NK_24
28.5
NK_25
28.3
NK_26
28.2
NK_27
28.0
NK_28
28.0
NK_29
27.4
NK_30
27.3
NK_31
27.3
NK_32
27.2
NK_33
27.1
NK_34
26.9
NK_35
26.8
NK_36
26.1
NK_37
26.0
NK_38
25.9
NK_39
25.9
NK_40
25.7
NK_41
25.6
NK_42
25.0
NK_43
24.7
NK_44
24.6
NK_45
24.5
NK_46
24.5
NK_47
24.5
NK_48
24.5
NK_49
24.4
NK_50
24.3
NK_51
24.3
NK_52
23.9
NK_53
23.7
NK_54
23.7
NK_55
23.5
NK_56
23.5
NK_57
23.4
NK_58
23.4
NK_59
23.1
NK_60
23.0
NK_61
23.0
NK_62
22.7
NK_63
22.6
NK_64
22.5
NK_65
22.4
NK_66
21.7
NK_67
21.6
NK_68
21.6
NK_69
21.4
NK_70
21.3
NK_71
21.1
NK_72
20.5
NK_73
19.8
NK_74
19.8
NK_75
19.6
NK_76
19.0
NK_77
18.8
NK_78
18.1
NK_79
18.0
NK_80
17.9
NK_81
17.7
NK_82
17.6
NK_83
17.6
NK_84
17.3
NK_85
16.4
NK_86
15.9
NK_87
14.8
NK_88
14.7
NK_89
13.8
NK_90
12.2
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