A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
842.6
nTPM
Schmiedel:
257.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.0
P10809_1039
0.3
P10809_1058
0.1
P10809_1080
0.4
P10809_1107
0.2
Intermediate monocyte nTPM: 1.1
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1004
0.1
P10809_1023
3.2
P10809_1042
1.6
P10809_1061
0.0
P10809_1081
1.6
P10809_1108
0.1
Non-classical monocyte nTPM: 1.2
Samples: 5
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1005
0.6
P10809_1053
2.8
P10809_1072
0.0
P10809_1082
1.4
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
842.6
Monaco sample
nTPM
Classical monocyte nTPM: 842.6
Samples: 4
Max nTPM: 1551.0
Min nTPM: 138.9
RHH5313_R3680
138.9
RHH5221_R3593
1551.0
RHH5250_R3622
1509.0
RHH5279_R3651
171.6
Intermediate monocyte nTPM: 283.9
Samples: 4
Max nTPM: 502.7
Min nTPM: 79.3
RHH5314_R3681
114.9
RHH5222_R3594
438.7
RHH5251_R3623
502.7
RHH5280_R3652
79.3
Non-classical monocyte nTPM: 214.1
Samples: 4
Max nTPM: 434.2
Min nTPM: 38.0
RHH5315_R3682
46.1
RHH5223_R3595
434.2
RHH5252_R3624
338.1
RHH5281_R3653
38.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
257.4
Schmiedel sample id
TPM
Classical monocyte TPM: 257.4
Samples: 91
Max TPM: 868.6
Min TPM: 42.5
MONOCYTES_1
868.6
MONOCYTES_2
794.4
MONOCYTES_3
763.8
MONOCYTES_4
760.5
MONOCYTES_5
575.7
MONOCYTES_6
560.7
MONOCYTES_7
533.2
MONOCYTES_8
530.2
MONOCYTES_9
527.5
MONOCYTES_10
525.1
MONOCYTES_11
465.4
MONOCYTES_12
461.7
MONOCYTES_13
454.3
MONOCYTES_14
453.1
MONOCYTES_15
450.5
MONOCYTES_16
406.3
MONOCYTES_17
401.9
MONOCYTES_18
399.0
MONOCYTES_19
394.8
MONOCYTES_20
368.1
MONOCYTES_21
333.7
MONOCYTES_22
310.0
MONOCYTES_23
308.9
MONOCYTES_24
303.1
MONOCYTES_25
302.8
MONOCYTES_26
295.3
MONOCYTES_27
284.5
MONOCYTES_28
280.6
MONOCYTES_29
275.3
MONOCYTES_30
272.0
MONOCYTES_31
267.2
MONOCYTES_32
265.8
MONOCYTES_33
261.5
MONOCYTES_34
258.7
MONOCYTES_35
258.4
MONOCYTES_36
240.0
MONOCYTES_37
238.3
MONOCYTES_38
233.3
MONOCYTES_39
231.8
MONOCYTES_40
228.4
MONOCYTES_41
225.8
MONOCYTES_42
217.0
MONOCYTES_43
216.9
MONOCYTES_44
214.4
MONOCYTES_45
210.4
MONOCYTES_46
206.6
MONOCYTES_47
204.1
MONOCYTES_48
203.0
MONOCYTES_49
202.5
MONOCYTES_50
202.3
MONOCYTES_51
200.1
MONOCYTES_52
199.2
MONOCYTES_53
193.1
MONOCYTES_54
185.1
MONOCYTES_55
183.6
MONOCYTES_56
180.8
MONOCYTES_57
178.4
MONOCYTES_58
174.0
MONOCYTES_59
172.6
MONOCYTES_60
170.9
MONOCYTES_61
167.5
MONOCYTES_62
166.5
MONOCYTES_63
165.6
MONOCYTES_64
163.7
MONOCYTES_65
153.7
MONOCYTES_66
152.5
MONOCYTES_67
148.0
MONOCYTES_68
143.8
MONOCYTES_69
142.7
MONOCYTES_70
136.9
MONOCYTES_71
129.4
MONOCYTES_72
121.9
MONOCYTES_73
110.4
MONOCYTES_74
107.3
MONOCYTES_75
105.3
MONOCYTES_76
103.0
MONOCYTES_77
97.3
MONOCYTES_78
97.1
MONOCYTES_79
93.1
MONOCYTES_80
83.5
MONOCYTES_81
82.1
MONOCYTES_82
81.9
MONOCYTES_83
79.5
MONOCYTES_84
78.7
MONOCYTES_85
77.9
MONOCYTES_86
77.8
MONOCYTES_87
65.5
MONOCYTES_88
58.2
MONOCYTES_89
54.7
MONOCYTES_90
53.4
MONOCYTES_91
42.5
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Non-classical monocyte TPM: 10.5
Samples: 90
Max TPM: 33.6
Min TPM: 1.7
M2_1
33.6
M2_2
24.8
M2_3
23.7
M2_4
23.4
M2_5
22.2
M2_6
21.6
M2_7
21.0
M2_8
20.8
M2_9
19.6
M2_10
19.1
M2_11
18.2
M2_12
16.4
M2_13
16.4
M2_14
15.7
M2_15
15.4
M2_16
15.2
M2_17
14.1
M2_18
14.0
M2_19
13.7
M2_20
13.6
M2_21
12.9
M2_22
12.7
M2_23
12.6
M2_24
12.6
M2_25
12.3
M2_26
12.1
M2_27
12.1
M2_28
12.1
M2_29
12.1
M2_30
12.0
M2_31
11.2
M2_32
11.1
M2_33
10.9
M2_34
10.5
M2_35
10.5
M2_36
10.5
M2_37
10.4
M2_38
10.1
M2_39
10.0
M2_40
10.0
M2_41
9.9
M2_42
9.8
M2_43
9.7
M2_44
9.6
M2_45
9.5
M2_46
9.4
M2_47
9.3
M2_48
8.9
M2_49
8.8
M2_50
8.4
M2_51
8.4
M2_52
8.2
M2_53
8.1
M2_54
7.9
M2_55
7.9
M2_56
7.6
M2_57
7.6
M2_58
7.5
M2_59
7.4
M2_60
7.3
M2_61
7.1
M2_62
7.1
M2_63
7.1
M2_64
7.0
M2_65
7.0
M2_66
6.7
M2_67
6.6
M2_68
6.4
M2_69
6.3
M2_70
6.2
M2_71
6.2
M2_72
6.1
M2_73
6.0
M2_74
6.0
M2_75
5.9
M2_76
5.8
M2_77
5.8
M2_78
5.4
M2_79
5.3
M2_80
5.2
M2_81
5.0
M2_82
4.9
M2_83
4.8
M2_84
4.1
M2_85
3.8
M2_86
3.5
M2_87
3.5
M2_88
2.6
M2_89
2.1
M2_90
1.7
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