A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.1
nTPM
Monaco:
37.2
nTPM
Schmiedel:
78.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.1
HPA sample
nTPM
Classical monocyte nTPM: 8.3
Samples: 6
Max nTPM: 11.1
Min nTPM: 4.7
P10809_1003
11.1
P10809_1020
10.0
P10809_1039
9.2
P10809_1058
9.3
P10809_1080
4.7
P10809_1107
5.7
Intermediate monocyte nTPM: 11.6
Samples: 6
Max nTPM: 16.5
Min nTPM: 6.6
P10809_1004
16.5
P10809_1023
12.0
P10809_1042
13.7
P10809_1061
13.4
P10809_1081
6.6
P10809_1108
7.5
Non-classical monocyte nTPM: 17.1
Samples: 5
Max nTPM: 20.3
Min nTPM: 15.4
P10809_1005
20.3
P10809_1053
15.4
P10809_1072
17.5
P10809_1082
15.4
P10809_1109
16.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.2
Monaco sample
nTPM
Classical monocyte nTPM: 28.5
Samples: 4
Max nTPM: 41.6
Min nTPM: 10.7
RHH5313_R3680
41.6
RHH5221_R3593
40.5
RHH5250_R3622
10.7
RHH5279_R3651
21.2
Intermediate monocyte nTPM: 17.6
Samples: 4
Max nTPM: 29.1
Min nTPM: 11.7
RHH5314_R3681
17.1
RHH5222_R3594
29.1
RHH5251_R3623
12.6
RHH5280_R3652
11.7
Non-classical monocyte nTPM: 37.2
Samples: 4
Max nTPM: 54.0
Min nTPM: 26.9
RHH5315_R3682
32.7
RHH5223_R3595
35.3
RHH5252_R3624
54.0
RHH5281_R3653
26.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.7
Schmiedel sample id
TPM
Classical monocyte TPM: 33.4
Samples: 91
Max TPM: 54.3
Min TPM: 21.9
MONOCYTES_1
54.3
MONOCYTES_2
49.9
MONOCYTES_3
44.0
MONOCYTES_4
43.5
MONOCYTES_5
43.3
MONOCYTES_6
41.2
MONOCYTES_7
40.4
MONOCYTES_8
40.2
MONOCYTES_9
40.2
MONOCYTES_10
40.0
MONOCYTES_11
40.0
MONOCYTES_12
40.0
MONOCYTES_13
39.9
MONOCYTES_14
39.8
MONOCYTES_15
39.6
MONOCYTES_16
39.5
MONOCYTES_17
38.5
MONOCYTES_18
38.4
MONOCYTES_19
38.3
MONOCYTES_20
38.2
MONOCYTES_21
38.2
MONOCYTES_22
37.8
MONOCYTES_23
37.6
MONOCYTES_24
37.5
MONOCYTES_25
37.0
MONOCYTES_26
36.9
MONOCYTES_27
36.4
MONOCYTES_28
36.4
MONOCYTES_29
35.9
MONOCYTES_30
35.8
MONOCYTES_31
35.6
MONOCYTES_32
35.6
MONOCYTES_33
35.5
MONOCYTES_34
35.3
MONOCYTES_35
35.3
MONOCYTES_36
35.0
MONOCYTES_37
34.9
MONOCYTES_38
34.9
MONOCYTES_39
34.6
MONOCYTES_40
34.4
MONOCYTES_41
34.3
MONOCYTES_42
33.7
MONOCYTES_43
33.7
MONOCYTES_44
33.6
MONOCYTES_45
33.5
MONOCYTES_46
33.5
MONOCYTES_47
33.0
MONOCYTES_48
32.8
MONOCYTES_49
32.7
MONOCYTES_50
32.5
MONOCYTES_51
32.5
MONOCYTES_52
32.4
MONOCYTES_53
32.2
MONOCYTES_54
32.2
MONOCYTES_55
32.1
MONOCYTES_56
32.1
MONOCYTES_57
31.7
MONOCYTES_58
31.7
MONOCYTES_59
31.3
MONOCYTES_60
30.6
MONOCYTES_61
30.5
MONOCYTES_62
30.3
MONOCYTES_63
30.3
MONOCYTES_64
30.1
MONOCYTES_65
29.6
MONOCYTES_66
29.5
MONOCYTES_67
29.2
MONOCYTES_68
28.7
MONOCYTES_69
28.7
MONOCYTES_70
28.7
MONOCYTES_71
28.5
MONOCYTES_72
28.3
MONOCYTES_73
28.1
MONOCYTES_74
27.9
MONOCYTES_75
27.3
MONOCYTES_76
27.2
MONOCYTES_77
27.2
MONOCYTES_78
27.1
MONOCYTES_79
26.5
MONOCYTES_80
26.3
MONOCYTES_81
26.1
MONOCYTES_82
26.1
MONOCYTES_83
26.0
MONOCYTES_84
25.9
MONOCYTES_85
25.8
MONOCYTES_86
24.1
MONOCYTES_87
24.0
MONOCYTES_88
23.9
MONOCYTES_89
23.7
MONOCYTES_90
22.3
MONOCYTES_91
21.9
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Non-classical monocyte TPM: 78.7
Samples: 90
Max TPM: 125.9
Min TPM: 35.4
M2_1
125.9
M2_2
117.2
M2_3
113.9
M2_4
113.3
M2_5
111.7
M2_6
111.7
M2_7
110.0
M2_8
105.4
M2_9
101.7
M2_10
99.6
M2_11
98.0
M2_12
96.7
M2_13
95.7
M2_14
95.7
M2_15
94.7
M2_16
93.8
M2_17
90.5
M2_18
88.9
M2_19
88.4
M2_20
88.0
M2_21
86.8
M2_22
86.8
M2_23
85.8
M2_24
84.8
M2_25
84.6
M2_26
84.5
M2_27
84.4
M2_28
83.5
M2_29
83.2
M2_30
82.9
M2_31
82.2
M2_32
81.9
M2_33
81.5
M2_34
81.3
M2_35
80.6
M2_36
80.3
M2_37
79.9
M2_38
79.6
M2_39
79.1
M2_40
78.0
M2_41
78.0
M2_42
77.4
M2_43
77.4
M2_44
77.0
M2_45
77.0
M2_46
76.1
M2_47
75.9
M2_48
75.8
M2_49
75.7
M2_50
75.0
M2_51
75.0
M2_52
74.8
M2_53
74.7
M2_54
73.9
M2_55
71.6
M2_56
71.1
M2_57
70.9
M2_58
70.6
M2_59
70.4
M2_60
69.8
M2_61
69.6
M2_62
69.1
M2_63
68.7
M2_64
68.5
M2_65
67.9
M2_66
67.0
M2_67
67.0
M2_68
66.6
M2_69
66.5
M2_70
66.2
M2_71
65.6
M2_72
65.4
M2_73
65.4
M2_74
64.8
M2_75
64.8
M2_76
64.7
M2_77
64.7
M2_78
64.2
M2_79
64.1
M2_80
63.4
M2_81
63.0
M2_82
62.4
M2_83
62.1
M2_84
61.5
M2_85
60.9
M2_86
59.9
M2_87
58.2
M2_88
58.1
M2_89
57.0
M2_90
35.4
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