A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
113.4
nTPM
Monaco:
746.4
nTPM
Schmiedel:
550.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.4
HPA sample
nTPM
Classical monocyte nTPM: 74.3
Samples: 6
Max nTPM: 103.9
Min nTPM: 54.1
P10809_1003
69.7
P10809_1020
54.1
P10809_1039
71.0
P10809_1058
74.6
P10809_1080
103.9
P10809_1107
72.3
Intermediate monocyte nTPM: 81.3
Samples: 6
Max nTPM: 98.4
Min nTPM: 68.8
P10809_1004
88.1
P10809_1023
75.9
P10809_1042
98.4
P10809_1061
75.4
P10809_1081
68.8
P10809_1108
81.0
Non-classical monocyte nTPM: 113.4
Samples: 5
Max nTPM: 135.6
Min nTPM: 94.3
P10809_1005
94.3
P10809_1053
135.5
P10809_1072
135.6
P10809_1082
98.3
P10809_1109
103.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
746.4
Monaco sample
nTPM
Classical monocyte nTPM: 639.2
Samples: 4
Max nTPM: 708.6
Min nTPM: 564.7
RHH5313_R3680
682.6
RHH5221_R3593
601.0
RHH5250_R3622
564.7
RHH5279_R3651
708.6
Intermediate monocyte nTPM: 549.1
Samples: 4
Max nTPM: 571.6
Min nTPM: 518.2
RHH5314_R3681
518.2
RHH5222_R3594
551.8
RHH5251_R3623
554.9
RHH5280_R3652
571.6
Non-classical monocyte nTPM: 746.4
Samples: 4
Max nTPM: 899.5
Min nTPM: 633.9
RHH5315_R3682
633.9
RHH5223_R3595
899.5
RHH5252_R3624
707.6
RHH5281_R3653
744.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
550.5
Schmiedel sample id
TPM
Classical monocyte TPM: 550.5
Samples: 91
Max TPM: 751.0
Min TPM: 371.3
MONOCYTES_1
751.0
MONOCYTES_2
739.0
MONOCYTES_3
730.0
MONOCYTES_4
728.8
MONOCYTES_5
713.9
MONOCYTES_6
697.8
MONOCYTES_7
690.4
MONOCYTES_8
689.1
MONOCYTES_9
682.1
MONOCYTES_10
667.3
MONOCYTES_11
660.1
MONOCYTES_12
656.3
MONOCYTES_13
653.6
MONOCYTES_14
639.6
MONOCYTES_15
636.6
MONOCYTES_16
630.4
MONOCYTES_17
623.9
MONOCYTES_18
622.1
MONOCYTES_19
619.9
MONOCYTES_20
616.7
MONOCYTES_21
612.1
MONOCYTES_22
610.5
MONOCYTES_23
609.2
MONOCYTES_24
608.6
MONOCYTES_25
607.5
MONOCYTES_26
603.4
MONOCYTES_27
602.4
MONOCYTES_28
602.1
MONOCYTES_29
597.4
MONOCYTES_30
595.6
MONOCYTES_31
594.8
MONOCYTES_32
583.3
MONOCYTES_33
576.8
MONOCYTES_34
575.0
MONOCYTES_35
573.5
MONOCYTES_36
572.3
MONOCYTES_37
568.6
MONOCYTES_38
561.7
MONOCYTES_39
560.1
MONOCYTES_40
559.7
MONOCYTES_41
559.3
MONOCYTES_42
552.4
MONOCYTES_43
550.4
MONOCYTES_44
550.1
MONOCYTES_45
548.7
MONOCYTES_46
546.0
MONOCYTES_47
537.4
MONOCYTES_48
531.0
MONOCYTES_49
530.8
MONOCYTES_50
530.1
MONOCYTES_51
529.5
MONOCYTES_52
529.0
MONOCYTES_53
527.3
MONOCYTES_54
526.6
MONOCYTES_55
526.2
MONOCYTES_56
524.2
MONOCYTES_57
523.3
MONOCYTES_58
522.9
MONOCYTES_59
520.2
MONOCYTES_60
519.9
MONOCYTES_61
507.1
MONOCYTES_62
505.3
MONOCYTES_63
496.4
MONOCYTES_64
494.1
MONOCYTES_65
486.4
MONOCYTES_66
486.3
MONOCYTES_67
486.3
MONOCYTES_68
481.5
MONOCYTES_69
481.5
MONOCYTES_70
480.9
MONOCYTES_71
480.0
MONOCYTES_72
478.0
MONOCYTES_73
477.6
MONOCYTES_74
476.2
MONOCYTES_75
475.8
MONOCYTES_76
468.5
MONOCYTES_77
462.8
MONOCYTES_78
459.8
MONOCYTES_79
457.3
MONOCYTES_80
455.3
MONOCYTES_81
446.1
MONOCYTES_82
443.6
MONOCYTES_83
430.2
MONOCYTES_84
425.5
MONOCYTES_85
424.8
MONOCYTES_86
423.2
MONOCYTES_87
420.1
MONOCYTES_88
413.5
MONOCYTES_89
396.3
MONOCYTES_90
391.0
MONOCYTES_91
371.3
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Non-classical monocyte TPM: 529.4
Samples: 90
Max TPM: 1074.8
Min TPM: 344.1
M2_1
1074.8
M2_2
837.8
M2_3
774.7
M2_4
711.0
M2_5
695.0
M2_6
682.9
M2_7
675.7
M2_8
667.7
M2_9
655.1
M2_10
652.6
M2_11
651.0
M2_12
650.7
M2_13
640.2
M2_14
633.6
M2_15
629.6
M2_16
624.2
M2_17
622.5
M2_18
621.8
M2_19
620.0
M2_20
615.6
M2_21
615.3
M2_22
607.7
M2_23
605.3
M2_24
603.5
M2_25
595.0
M2_26
588.6
M2_27
585.4
M2_28
581.3
M2_29
580.1
M2_30
578.2
M2_31
572.6
M2_32
572.0
M2_33
560.3
M2_34
558.5
M2_35
557.3
M2_36
557.1
M2_37
554.6
M2_38
552.7
M2_39
551.2
M2_40
548.3
M2_41
545.7
M2_42
534.5
M2_43
532.9
M2_44
531.2
M2_45
529.0
M2_46
526.9
M2_47
526.7
M2_48
523.9
M2_49
520.4
M2_50
517.2
M2_51
512.9
M2_52
497.6
M2_53
495.8
M2_54
490.1
M2_55
489.6
M2_56
487.9
M2_57
484.7
M2_58
483.4
M2_59
483.3
M2_60
481.1
M2_61
480.8
M2_62
472.4
M2_63
470.6
M2_64
465.3
M2_65
461.2
M2_66
451.8
M2_67
439.6
M2_68
438.7
M2_69
421.0
M2_70
418.1
M2_71
415.0
M2_72
413.9
M2_73
412.5
M2_74
411.7
M2_75
403.7
M2_76
401.2
M2_77
393.9
M2_78
391.6
M2_79
388.4
M2_80
386.1
M2_81
383.5
M2_82
382.0
M2_83
380.9
M2_84
374.6
M2_85
373.1
M2_86
362.6
M2_87
353.9
M2_88
349.3
M2_89
347.8
M2_90
344.1
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