A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
67.3
nTPM
Monaco:
267.7
nTPM
Schmiedel:
116.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.3
HPA sample
nTPM
Classical monocyte nTPM: 43.1
Samples: 6
Max nTPM: 51.6
Min nTPM: 36.6
P10809_1003
43.1
P10809_1020
51.6
P10809_1039
41.7
P10809_1058
36.6
P10809_1080
42.6
P10809_1107
43.1
Intermediate monocyte nTPM: 56.8
Samples: 6
Max nTPM: 70.6
Min nTPM: 35.1
P10809_1004
61.0
P10809_1023
70.6
P10809_1042
68.4
P10809_1061
58.4
P10809_1081
47.3
P10809_1108
35.1
Non-classical monocyte nTPM: 67.3
Samples: 5
Max nTPM: 116.4
Min nTPM: 44.7
P10809_1005
55.3
P10809_1053
70.3
P10809_1072
116.4
P10809_1082
44.7
P10809_1109
49.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
267.7
Monaco sample
nTPM
Classical monocyte nTPM: 184.8
Samples: 4
Max nTPM: 204.7
Min nTPM: 156.1
RHH5313_R3680
204.7
RHH5221_R3593
156.1
RHH5250_R3622
191.9
RHH5279_R3651
186.4
Intermediate monocyte nTPM: 226.6
Samples: 4
Max nTPM: 237.1
Min nTPM: 214.3
RHH5314_R3681
218.3
RHH5222_R3594
236.5
RHH5251_R3623
237.1
RHH5280_R3652
214.3
Non-classical monocyte nTPM: 267.7
Samples: 4
Max nTPM: 293.2
Min nTPM: 253.8
RHH5315_R3682
261.7
RHH5223_R3595
262.2
RHH5252_R3624
293.2
RHH5281_R3653
253.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.9
Schmiedel sample id
TPM
Classical monocyte TPM: 69.4
Samples: 91
Max TPM: 120.3
Min TPM: 41.1
MONOCYTES_1
120.3
MONOCYTES_2
91.5
MONOCYTES_3
85.7
MONOCYTES_4
84.9
MONOCYTES_5
83.1
MONOCYTES_6
81.8
MONOCYTES_7
81.7
MONOCYTES_8
81.5
MONOCYTES_9
80.3
MONOCYTES_10
80.2
MONOCYTES_11
78.2
MONOCYTES_12
78.0
MONOCYTES_13
77.6
MONOCYTES_14
77.4
MONOCYTES_15
77.2
MONOCYTES_16
77.2
MONOCYTES_17
77.0
MONOCYTES_18
77.0
MONOCYTES_19
76.8
MONOCYTES_20
76.7
MONOCYTES_21
76.2
MONOCYTES_22
76.2
MONOCYTES_23
76.0
MONOCYTES_24
75.6
MONOCYTES_25
75.6
MONOCYTES_26
74.9
MONOCYTES_27
74.8
MONOCYTES_28
74.5
MONOCYTES_29
74.4
MONOCYTES_30
74.2
MONOCYTES_31
74.2
MONOCYTES_32
73.9
MONOCYTES_33
73.6
MONOCYTES_34
72.8
MONOCYTES_35
72.8
MONOCYTES_36
72.1
MONOCYTES_37
71.9
MONOCYTES_38
71.2
MONOCYTES_39
71.0
MONOCYTES_40
70.4
MONOCYTES_41
70.3
MONOCYTES_42
69.9
MONOCYTES_43
69.7
MONOCYTES_44
69.5
MONOCYTES_45
69.4
MONOCYTES_46
69.3
MONOCYTES_47
69.2
MONOCYTES_48
69.0
MONOCYTES_49
68.8
MONOCYTES_50
68.7
MONOCYTES_51
68.1
MONOCYTES_52
68.1
MONOCYTES_53
67.9
MONOCYTES_54
67.1
MONOCYTES_55
67.0
MONOCYTES_56
66.2
MONOCYTES_57
66.1
MONOCYTES_58
65.7
MONOCYTES_59
65.5
MONOCYTES_60
65.5
MONOCYTES_61
65.4
MONOCYTES_62
65.2
MONOCYTES_63
65.0
MONOCYTES_64
64.7
MONOCYTES_65
64.6
MONOCYTES_66
64.4
MONOCYTES_67
64.0
MONOCYTES_68
63.6
MONOCYTES_69
62.8
MONOCYTES_70
62.6
MONOCYTES_71
62.2
MONOCYTES_72
62.0
MONOCYTES_73
62.0
MONOCYTES_74
61.5
MONOCYTES_75
61.4
MONOCYTES_76
60.2
MONOCYTES_77
59.9
MONOCYTES_78
59.8
MONOCYTES_79
59.2
MONOCYTES_80
58.5
MONOCYTES_81
57.7
MONOCYTES_82
57.1
MONOCYTES_83
56.6
MONOCYTES_84
56.0
MONOCYTES_85
55.3
MONOCYTES_86
55.2
MONOCYTES_87
54.1
MONOCYTES_88
53.1
MONOCYTES_89
51.8
MONOCYTES_90
49.4
MONOCYTES_91
41.1
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Non-classical monocyte TPM: 116.9
Samples: 90
Max TPM: 201.7
Min TPM: 77.6
M2_1
201.7
M2_2
162.9
M2_3
146.9
M2_4
145.8
M2_5
145.6
M2_6
139.3
M2_7
136.9
M2_8
136.8
M2_9
136.7
M2_10
135.0
M2_11
134.5
M2_12
132.9
M2_13
132.7
M2_14
131.8
M2_15
131.6
M2_16
130.9
M2_17
130.4
M2_18
130.0
M2_19
129.8
M2_20
129.0
M2_21
128.9
M2_22
128.1
M2_23
127.9
M2_24
127.9
M2_25
127.2
M2_26
127.2
M2_27
126.6
M2_28
126.2
M2_29
125.7
M2_30
125.6
M2_31
124.9
M2_32
124.8
M2_33
123.6
M2_34
123.4
M2_35
122.9
M2_36
122.0
M2_37
121.7
M2_38
121.5
M2_39
120.8
M2_40
120.2
M2_41
120.1
M2_42
119.2
M2_43
118.8
M2_44
118.3
M2_45
118.2
M2_46
117.9
M2_47
117.3
M2_48
116.3
M2_49
116.2
M2_50
116.1
M2_51
115.5
M2_52
114.7
M2_53
114.0
M2_54
113.9
M2_55
112.7
M2_56
111.4
M2_57
110.2
M2_58
110.1
M2_59
109.6
M2_60
109.2
M2_61
108.4
M2_62
108.4
M2_63
108.1
M2_64
107.6
M2_65
107.3
M2_66
106.5
M2_67
106.0
M2_68
105.1
M2_69
104.4
M2_70
104.3
M2_71
103.9
M2_72
101.6
M2_73
98.3
M2_74
98.2
M2_75
97.2
M2_76
97.1
M2_77
97.0
M2_78
94.5
M2_79
94.5
M2_80
93.1
M2_81
93.0
M2_82
92.2
M2_83
92.0
M2_84
90.8
M2_85
90.2
M2_86
89.7
M2_87
88.0
M2_88
86.5
M2_89
82.7
M2_90
77.6
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