A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
72.2
nTPM
Monaco:
52.0
nTPM
Schmiedel:
28.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.2
HPA sample
nTPM
Classical monocyte nTPM: 47.5
Samples: 6
Max nTPM: 65.1
Min nTPM: 19.4
P10809_1003
19.4
P10809_1020
51.1
P10809_1039
65.1
P10809_1058
44.5
P10809_1080
45.3
P10809_1107
59.4
Intermediate monocyte nTPM: 66.0
Samples: 6
Max nTPM: 97.5
Min nTPM: 45.4
P10809_1004
45.4
P10809_1023
77.3
P10809_1042
57.9
P10809_1061
52.8
P10809_1081
65.1
P10809_1108
97.5
Non-classical monocyte nTPM: 72.2
Samples: 5
Max nTPM: 95.9
Min nTPM: 52.5
P10809_1005
52.5
P10809_1053
66.5
P10809_1072
57.0
P10809_1082
89.0
P10809_1109
95.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.0
Monaco sample
nTPM
Classical monocyte nTPM: 32.4
Samples: 4
Max nTPM: 43.7
Min nTPM: 24.8
RHH5313_R3680
43.7
RHH5221_R3593
31.4
RHH5250_R3622
24.8
RHH5279_R3651
29.6
Intermediate monocyte nTPM: 40.1
Samples: 4
Max nTPM: 44.3
Min nTPM: 32.6
RHH5314_R3681
44.3
RHH5222_R3594
42.9
RHH5251_R3623
32.6
RHH5280_R3652
40.7
Non-classical monocyte nTPM: 52.0
Samples: 4
Max nTPM: 70.1
Min nTPM: 39.9
RHH5315_R3682
39.9
RHH5223_R3595
70.1
RHH5252_R3624
45.6
RHH5281_R3653
52.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.4
Schmiedel sample id
TPM
Classical monocyte TPM: 15.0
Samples: 91
Max TPM: 20.2
Min TPM: 10.2
MONOCYTES_1
20.2
MONOCYTES_2
20.2
MONOCYTES_3
19.8
MONOCYTES_4
19.2
MONOCYTES_5
19.1
MONOCYTES_6
18.7
MONOCYTES_7
18.5
MONOCYTES_8
18.2
MONOCYTES_9
18.0
MONOCYTES_10
17.9
MONOCYTES_11
17.8
MONOCYTES_12
17.8
MONOCYTES_13
17.8
MONOCYTES_14
17.6
MONOCYTES_15
17.4
MONOCYTES_16
17.2
MONOCYTES_17
17.1
MONOCYTES_18
17.1
MONOCYTES_19
17.0
MONOCYTES_20
16.8
MONOCYTES_21
16.8
MONOCYTES_22
16.8
MONOCYTES_23
16.7
MONOCYTES_24
16.6
MONOCYTES_25
16.6
MONOCYTES_26
16.4
MONOCYTES_27
16.4
MONOCYTES_28
16.4
MONOCYTES_29
16.3
MONOCYTES_30
16.0
MONOCYTES_31
16.0
MONOCYTES_32
16.0
MONOCYTES_33
15.9
MONOCYTES_34
15.7
MONOCYTES_35
15.6
MONOCYTES_36
15.6
MONOCYTES_37
15.3
MONOCYTES_38
15.3
MONOCYTES_39
15.3
MONOCYTES_40
15.2
MONOCYTES_41
15.2
MONOCYTES_42
15.1
MONOCYTES_43
15.1
MONOCYTES_44
15.1
MONOCYTES_45
15.0
MONOCYTES_46
14.8
MONOCYTES_47
14.8
MONOCYTES_48
14.7
MONOCYTES_49
14.7
MONOCYTES_50
14.7
MONOCYTES_51
14.6
MONOCYTES_52
14.6
MONOCYTES_53
14.6
MONOCYTES_54
14.6
MONOCYTES_55
14.4
MONOCYTES_56
14.3
MONOCYTES_57
14.3
MONOCYTES_58
14.2
MONOCYTES_59
14.1
MONOCYTES_60
13.9
MONOCYTES_61
13.9
MONOCYTES_62
13.9
MONOCYTES_63
13.8
MONOCYTES_64
13.8
MONOCYTES_65
13.7
MONOCYTES_66
13.7
MONOCYTES_67
13.7
MONOCYTES_68
13.6
MONOCYTES_69
13.6
MONOCYTES_70
13.6
MONOCYTES_71
13.6
MONOCYTES_72
13.5
MONOCYTES_73
13.2
MONOCYTES_74
13.2
MONOCYTES_75
13.0
MONOCYTES_76
12.9
MONOCYTES_77
12.8
MONOCYTES_78
12.8
MONOCYTES_79
12.7
MONOCYTES_80
12.3
MONOCYTES_81
12.2
MONOCYTES_82
12.0
MONOCYTES_83
11.8
MONOCYTES_84
11.7
MONOCYTES_85
11.7
MONOCYTES_86
11.6
MONOCYTES_87
11.1
MONOCYTES_88
11.0
MONOCYTES_89
11.0
MONOCYTES_90
10.4
MONOCYTES_91
10.2
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Non-classical monocyte TPM: 28.4
Samples: 90
Max TPM: 42.0
Min TPM: 18.1
M2_1
42.0
M2_2
38.8
M2_3
38.7
M2_4
38.2
M2_5
37.8
M2_6
36.7
M2_7
35.2
M2_8
34.6
M2_9
34.1
M2_10
34.1
M2_11
33.7
M2_12
33.4
M2_13
33.0
M2_14
32.9
M2_15
32.9
M2_16
32.6
M2_17
32.6
M2_18
32.4
M2_19
32.1
M2_20
31.9
M2_21
31.9
M2_22
31.8
M2_23
31.8
M2_24
31.6
M2_25
31.2
M2_26
30.9
M2_27
30.9
M2_28
30.8
M2_29
30.7
M2_30
30.6
M2_31
30.6
M2_32
30.3
M2_33
30.0
M2_34
29.9
M2_35
29.8
M2_36
29.8
M2_37
29.6
M2_38
29.5
M2_39
29.4
M2_40
29.4
M2_41
28.7
M2_42
28.6
M2_43
28.0
M2_44
27.9
M2_45
27.8
M2_46
27.6
M2_47
27.5
M2_48
27.5
M2_49
27.4
M2_50
27.4
M2_51
27.0
M2_52
26.8
M2_53
26.7
M2_54
26.6
M2_55
26.6
M2_56
26.5
M2_57
25.9
M2_58
25.9
M2_59
25.8
M2_60
25.8
M2_61
25.7
M2_62
25.7
M2_63
25.6
M2_64
25.6
M2_65
25.1
M2_66
25.1
M2_67
24.7
M2_68
24.7
M2_69
24.2
M2_70
24.2
M2_71
24.2
M2_72
23.8
M2_73
23.8
M2_74
23.8
M2_75
23.8
M2_76
23.7
M2_77
23.6
M2_78
23.3
M2_79
23.3
M2_80
23.2
M2_81
23.0
M2_82
22.9
M2_83
22.7
M2_84
22.7
M2_85
22.6
M2_86
22.2
M2_87
21.0
M2_88
20.2
M2_89
19.0
M2_90
18.1
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