A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.9
nTPM
Monaco:
23.5
nTPM
Schmiedel:
40.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
HPA sample
nTPM
NK-cell nTPM: 15.9
Samples: 6
Max nTPM: 24.3
Min nTPM: 11.1
P10809_1013
12.6
P10809_1033
13.7
P10809_1052
14.4
P10809_1071
11.1
P10809_1093
24.3
P10809_1103
19.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.5
Monaco sample
nTPM
NK-cell nTPM: 23.5
Samples: 4
Max nTPM: 44.2
Min nTPM: 9.7
RHH5316_R3683
17.4
RHH5224_R3596
44.2
RHH5253_R3625
9.7
RHH5282_R3654
22.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.4
Schmiedel sample id
TPM
NK-cell TPM: 40.4
Samples: 90
Max TPM: 117.1
Min TPM: 2.3
NK_1
117.1
NK_2
84.0
NK_3
83.3
NK_4
82.8
NK_5
79.7
NK_6
79.4
NK_7
78.7
NK_8
73.2
NK_9
72.6
NK_10
71.9
NK_11
71.4
NK_12
66.2
NK_13
64.6
NK_14
60.7
NK_15
60.7
NK_16
56.9
NK_17
56.3
NK_18
56.3
NK_19
55.7
NK_20
55.6
NK_21
55.5
NK_22
54.9
NK_23
54.2
NK_24
52.7
NK_25
52.2
NK_26
51.9
NK_27
51.6
NK_28
49.1
NK_29
49.0
NK_30
48.3
NK_31
46.9
NK_32
46.2
NK_33
46.1
NK_34
44.1
NK_35
43.2
NK_36
42.1
NK_37
41.4
NK_38
41.1
NK_39
41.0
NK_40
40.9
NK_41
40.6
NK_42
40.0
NK_43
39.2
NK_44
39.2
NK_45
38.0
NK_46
35.8
NK_47
34.1
NK_48
33.2
NK_49
32.5
NK_50
32.4
NK_51
32.3
NK_52
32.1
NK_53
30.2
NK_54
29.5
NK_55
29.2
NK_56
28.5
NK_57
27.7
NK_58
27.1
NK_59
26.0
NK_60
26.0
NK_61
25.9
NK_62
25.8
NK_63
25.6
NK_64
25.5
NK_65
25.3
NK_66
24.8
NK_67
23.7
NK_68
23.7
NK_69
23.3
NK_70
23.3
NK_71
23.2
NK_72
23.2
NK_73
23.1
NK_74
23.0
NK_75
23.0
NK_76
22.8
NK_77
22.0
NK_78
21.8
NK_79
20.4
NK_80
20.3
NK_81
19.1
NK_82
17.9
NK_83
16.3
NK_84
15.5
NK_85
15.1
NK_86
14.5
NK_87
14.3
NK_88
13.9
NK_89
8.5
NK_90
2.3
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