A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.5
nTPM
Monaco:
32.7
nTPM
Schmiedel:
75.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.5
HPA sample
nTPM
Classical monocyte nTPM: 5.5
Samples: 6
Max nTPM: 8.8
Min nTPM: 3.1
P10809_1003
3.1
P10809_1020
4.9
P10809_1039
8.8
P10809_1058
3.7
P10809_1080
5.9
P10809_1107
6.4
Intermediate monocyte nTPM: 1.3
Samples: 6
Max nTPM: 3.4
Min nTPM: 0.0
P10809_1004
1.5
P10809_1023
3.4
P10809_1042
0.7
P10809_1061
0.0
P10809_1081
1.0
P10809_1108
1.1
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1005
0.1
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.3
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Monaco sample
nTPM
Classical monocyte nTPM: 32.7
Samples: 4
Max nTPM: 39.2
Min nTPM: 24.5
RHH5313_R3680
38.4
RHH5221_R3593
24.5
RHH5250_R3622
28.8
RHH5279_R3651
39.2
Intermediate monocyte nTPM: 6.5
Samples: 4
Max nTPM: 10.8
Min nTPM: 3.4
RHH5314_R3681
10.8
RHH5222_R3594
7.0
RHH5251_R3623
4.9
RHH5280_R3652
3.4
Non-classical monocyte nTPM: 1.6
Samples: 4
Max nTPM: 3.2
Min nTPM: 0.4
RHH5315_R3682
3.2
RHH5223_R3595
1.8
RHH5252_R3624
0.4
RHH5281_R3653
1.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.9
Schmiedel sample id
TPM
Classical monocyte TPM: 75.9
Samples: 91
Max TPM: 98.8
Min TPM: 52.1
MONOCYTES_1
98.8
MONOCYTES_2
98.4
MONOCYTES_3
96.5
MONOCYTES_4
95.1
MONOCYTES_5
94.8
MONOCYTES_6
94.6
MONOCYTES_7
94.1
MONOCYTES_8
93.1
MONOCYTES_9
92.6
MONOCYTES_10
92.5
MONOCYTES_11
91.2
MONOCYTES_12
90.2
MONOCYTES_13
89.9
MONOCYTES_14
89.2
MONOCYTES_15
88.8
MONOCYTES_16
88.8
MONOCYTES_17
88.5
MONOCYTES_18
88.1
MONOCYTES_19
88.0
MONOCYTES_20
87.2
MONOCYTES_21
85.8
MONOCYTES_22
85.4
MONOCYTES_23
84.6
MONOCYTES_24
84.4
MONOCYTES_25
84.0
MONOCYTES_26
83.7
MONOCYTES_27
83.1
MONOCYTES_28
82.7
MONOCYTES_29
82.6
MONOCYTES_30
81.6
MONOCYTES_31
81.1
MONOCYTES_32
80.1
MONOCYTES_33
80.1
MONOCYTES_34
80.0
MONOCYTES_35
79.3
MONOCYTES_36
79.2
MONOCYTES_37
79.2
MONOCYTES_38
79.0
MONOCYTES_39
78.9
MONOCYTES_40
78.8
MONOCYTES_41
77.9
MONOCYTES_42
77.1
MONOCYTES_43
76.7
MONOCYTES_44
76.2
MONOCYTES_45
75.2
MONOCYTES_46
75.1
MONOCYTES_47
75.0
MONOCYTES_48
73.4
MONOCYTES_49
73.3
MONOCYTES_50
73.0
MONOCYTES_51
72.8
MONOCYTES_52
72.6
MONOCYTES_53
72.1
MONOCYTES_54
71.9
MONOCYTES_55
71.8
MONOCYTES_56
71.7
MONOCYTES_57
71.6
MONOCYTES_58
70.9
MONOCYTES_59
70.2
MONOCYTES_60
70.0
MONOCYTES_61
69.7
MONOCYTES_62
69.4
MONOCYTES_63
69.3
MONOCYTES_64
69.3
MONOCYTES_65
69.0
MONOCYTES_66
68.4
MONOCYTES_67
68.4
MONOCYTES_68
68.1
MONOCYTES_69
66.1
MONOCYTES_70
65.9
MONOCYTES_71
65.9
MONOCYTES_72
65.6
MONOCYTES_73
65.3
MONOCYTES_74
65.1
MONOCYTES_75
64.9
MONOCYTES_76
64.4
MONOCYTES_77
64.2
MONOCYTES_78
64.0
MONOCYTES_79
63.7
MONOCYTES_80
61.9
MONOCYTES_81
61.6
MONOCYTES_82
61.4
MONOCYTES_83
61.2
MONOCYTES_84
61.2
MONOCYTES_85
61.1
MONOCYTES_86
57.7
MONOCYTES_87
57.2
MONOCYTES_88
55.6
MONOCYTES_89
54.9
MONOCYTES_90
52.5
MONOCYTES_91
52.1
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Non-classical monocyte TPM: 6.5
Samples: 90
Max TPM: 11.6
Min TPM: 2.1
M2_1
11.6
M2_2
11.5
M2_3
11.5
M2_4
11.3
M2_5
11.1
M2_6
10.5
M2_7
10.0
M2_8
9.8
M2_9
9.7
M2_10
9.6
M2_11
9.1
M2_12
9.0
M2_13
9.0
M2_14
8.9
M2_15
8.8
M2_16
8.8
M2_17
8.6
M2_18
8.4
M2_19
8.4
M2_20
8.4
M2_21
8.3
M2_22
8.3
M2_23
8.1
M2_24
7.8
M2_25
7.8
M2_26
7.7
M2_27
7.5
M2_28
7.5
M2_29
7.4
M2_30
7.4
M2_31
7.4
M2_32
7.4
M2_33
7.3
M2_34
7.1
M2_35
7.1
M2_36
7.0
M2_37
6.9
M2_38
6.8
M2_39
6.8
M2_40
6.8
M2_41
6.8
M2_42
6.8
M2_43
6.8
M2_44
6.7
M2_45
6.6
M2_46
6.3
M2_47
6.3
M2_48
6.1
M2_49
6.0
M2_50
6.0
M2_51
5.9
M2_52
5.9
M2_53
5.8
M2_54
5.7
M2_55
5.6
M2_56
5.6
M2_57
5.5
M2_58
5.5
M2_59
5.5
M2_60
5.5
M2_61
5.3
M2_62
5.3
M2_63
5.2
M2_64
5.1
M2_65
5.0
M2_66
5.0
M2_67
4.9
M2_68
4.8
M2_69
4.8
M2_70
4.8
M2_71
4.6
M2_72
4.5
M2_73
4.4
M2_74
4.2
M2_75
4.2
M2_76
4.2
M2_77
4.0
M2_78
4.0
M2_79
4.0
M2_80
4.0
M2_81
3.9
M2_82
3.8
M2_83
3.8
M2_84
3.8
M2_85
3.4
M2_86
3.3
M2_87
3.1
M2_88
3.0
M2_89
2.8
M2_90
2.1
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