A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.7
nTPM
Monaco:
40.5
nTPM
Schmiedel:
23.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.7
HPA sample
nTPM
Classical monocyte nTPM: 16.6
Samples: 6
Max nTPM: 18.9
Min nTPM: 11.9
P10809_1003
11.9
P10809_1020
18.3
P10809_1039
18.7
P10809_1058
18.9
P10809_1080
16.7
P10809_1107
15.1
Intermediate monocyte nTPM: 20.7
Samples: 6
Max nTPM: 28.6
Min nTPM: 15.2
P10809_1004
15.9
P10809_1023
26.3
P10809_1042
15.2
P10809_1061
28.6
P10809_1081
20.0
P10809_1108
18.2
Non-classical monocyte nTPM: 19.7
Samples: 5
Max nTPM: 27.4
Min nTPM: 14.4
P10809_1005
17.4
P10809_1053
20.2
P10809_1072
27.4
P10809_1082
19.1
P10809_1109
14.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.5
Monaco sample
nTPM
Classical monocyte nTPM: 30.2
Samples: 4
Max nTPM: 42.3
Min nTPM: 24.3
RHH5313_R3680
26.6
RHH5221_R3593
42.3
RHH5250_R3622
24.3
RHH5279_R3651
27.5
Intermediate monocyte nTPM: 40.5
Samples: 4
Max nTPM: 47.1
Min nTPM: 36.7
RHH5314_R3681
47.1
RHH5222_R3594
37.7
RHH5251_R3623
36.7
RHH5280_R3652
40.5
Non-classical monocyte nTPM: 38.7
Samples: 4
Max nTPM: 46.7
Min nTPM: 26.8
RHH5315_R3682
26.8
RHH5223_R3595
46.7
RHH5252_R3624
45.0
RHH5281_R3653
36.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.0
Schmiedel sample id
TPM
Classical monocyte TPM: 15.2
Samples: 91
Max TPM: 18.7
Min TPM: 12.8
MONOCYTES_1
18.7
MONOCYTES_2
18.4
MONOCYTES_3
18.4
MONOCYTES_4
18.0
MONOCYTES_5
18.0
MONOCYTES_6
17.4
MONOCYTES_7
17.4
MONOCYTES_8
17.4
MONOCYTES_9
17.3
MONOCYTES_10
17.1
MONOCYTES_11
17.1
MONOCYTES_12
17.0
MONOCYTES_13
16.9
MONOCYTES_14
16.6
MONOCYTES_15
16.5
MONOCYTES_16
16.4
MONOCYTES_17
16.4
MONOCYTES_18
16.3
MONOCYTES_19
16.3
MONOCYTES_20
16.3
MONOCYTES_21
16.2
MONOCYTES_22
16.2
MONOCYTES_23
16.2
MONOCYTES_24
16.1
MONOCYTES_25
16.1
MONOCYTES_26
16.1
MONOCYTES_27
16.1
MONOCYTES_28
16.0
MONOCYTES_29
16.0
MONOCYTES_30
15.9
MONOCYTES_31
15.9
MONOCYTES_32
15.9
MONOCYTES_33
15.9
MONOCYTES_34
15.9
MONOCYTES_35
15.9
MONOCYTES_36
15.8
MONOCYTES_37
15.7
MONOCYTES_38
15.6
MONOCYTES_39
15.6
MONOCYTES_40
15.6
MONOCYTES_41
15.6
MONOCYTES_42
15.6
MONOCYTES_43
15.5
MONOCYTES_44
15.3
MONOCYTES_45
15.3
MONOCYTES_46
15.1
MONOCYTES_47
15.0
MONOCYTES_48
15.0
MONOCYTES_49
15.0
MONOCYTES_50
15.0
MONOCYTES_51
14.9
MONOCYTES_52
14.8
MONOCYTES_53
14.7
MONOCYTES_54
14.7
MONOCYTES_55
14.6
MONOCYTES_56
14.6
MONOCYTES_57
14.6
MONOCYTES_58
14.5
MONOCYTES_59
14.5
MONOCYTES_60
14.5
MONOCYTES_61
14.4
MONOCYTES_62
14.4
MONOCYTES_63
14.4
MONOCYTES_64
14.4
MONOCYTES_65
14.2
MONOCYTES_66
14.1
MONOCYTES_67
14.1
MONOCYTES_68
14.1
MONOCYTES_69
14.0
MONOCYTES_70
14.0
MONOCYTES_71
13.9
MONOCYTES_72
13.8
MONOCYTES_73
13.7
MONOCYTES_74
13.7
MONOCYTES_75
13.6
MONOCYTES_76
13.6
MONOCYTES_77
13.6
MONOCYTES_78
13.5
MONOCYTES_79
13.4
MONOCYTES_80
13.3
MONOCYTES_81
13.3
MONOCYTES_82
13.3
MONOCYTES_83
13.3
MONOCYTES_84
13.2
MONOCYTES_85
13.2
MONOCYTES_86
13.2
MONOCYTES_87
13.1
MONOCYTES_88
13.1
MONOCYTES_89
12.9
MONOCYTES_90
12.8
MONOCYTES_91
12.8
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Non-classical monocyte TPM: 23.0
Samples: 90
Max TPM: 33.0
Min TPM: 17.4
M2_1
33.0
M2_2
30.1
M2_3
29.5
M2_4
28.4
M2_5
27.8
M2_6
27.7
M2_7
27.6
M2_8
27.5
M2_9
27.4
M2_10
27.2
M2_11
27.1
M2_12
26.9
M2_13
26.6
M2_14
26.5
M2_15
26.4
M2_16
26.3
M2_17
25.9
M2_18
25.9
M2_19
25.7
M2_20
25.7
M2_21
25.5
M2_22
25.4
M2_23
25.3
M2_24
25.0
M2_25
24.9
M2_26
24.9
M2_27
24.9
M2_28
24.9
M2_29
24.6
M2_30
24.6
M2_31
24.5
M2_32
24.4
M2_33
24.3
M2_34
24.0
M2_35
23.9
M2_36
23.8
M2_37
23.7
M2_38
23.4
M2_39
23.3
M2_40
23.3
M2_41
23.1
M2_42
22.9
M2_43
22.8
M2_44
22.7
M2_45
22.6
M2_46
22.5
M2_47
22.3
M2_48
22.2
M2_49
22.1
M2_50
22.0
M2_51
21.9
M2_52
21.9
M2_53
21.7
M2_54
21.7
M2_55
21.5
M2_56
21.5
M2_57
21.3
M2_58
21.3
M2_59
21.3
M2_60
21.2
M2_61
21.0
M2_62
21.0
M2_63
20.9
M2_64
20.9
M2_65
20.8
M2_66
20.7
M2_67
20.7
M2_68
20.5
M2_69
20.5
M2_70
20.4
M2_71
20.4
M2_72
20.4
M2_73
20.2
M2_74
20.2
M2_75
20.1
M2_76
20.0
M2_77
20.0
M2_78
20.0
M2_79
19.9
M2_80
19.9
M2_81
19.8
M2_82
19.6
M2_83
19.1
M2_84
19.0
M2_85
18.6
M2_86
18.5
M2_87
18.5
M2_88
17.9
M2_89
17.8
M2_90
17.4
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