A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.4
nTPM
Monaco:
44.5
nTPM
Schmiedel:
14.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
HPA sample
nTPM
Classical monocyte nTPM: 12.9
Samples: 6
Max nTPM: 16.8
Min nTPM: 9.8
P10809_1003
9.8
P10809_1020
16.0
P10809_1039
16.8
P10809_1058
11.3
P10809_1080
11.9
P10809_1107
11.5
Intermediate monocyte nTPM: 14.4
Samples: 6
Max nTPM: 21.6
Min nTPM: 6.9
P10809_1004
16.2
P10809_1023
14.5
P10809_1042
21.6
P10809_1061
6.9
P10809_1081
15.0
P10809_1108
12.2
Non-classical monocyte nTPM: 13.1
Samples: 5
Max nTPM: 14.9
Min nTPM: 11.1
P10809_1005
14.9
P10809_1053
14.9
P10809_1072
11.1
P10809_1082
12.2
P10809_1109
12.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.5
Monaco sample
nTPM
Classical monocyte nTPM: 37.0
Samples: 4
Max nTPM: 52.6
Min nTPM: 29.0
RHH5313_R3680
29.0
RHH5221_R3593
52.6
RHH5250_R3622
35.7
RHH5279_R3651
30.6
Intermediate monocyte nTPM: 42.1
Samples: 4
Max nTPM: 52.5
Min nTPM: 30.6
RHH5314_R3681
35.0
RHH5222_R3594
52.5
RHH5251_R3623
30.6
RHH5280_R3652
50.3
Non-classical monocyte nTPM: 44.6
Samples: 4
Max nTPM: 55.3
Min nTPM: 37.3
RHH5315_R3682
44.3
RHH5223_R3595
55.3
RHH5252_R3624
41.3
RHH5281_R3653
37.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.7
Schmiedel sample id
TPM
Classical monocyte TPM: 11.3
Samples: 91
Max TPM: 17.1
Min TPM: 7.3
MONOCYTES_1
17.1
MONOCYTES_2
16.0
MONOCYTES_3
15.8
MONOCYTES_4
15.7
MONOCYTES_5
15.5
MONOCYTES_6
14.6
MONOCYTES_7
14.2
MONOCYTES_8
14.0
MONOCYTES_9
13.7
MONOCYTES_10
13.7
MONOCYTES_11
13.6
MONOCYTES_12
13.5
MONOCYTES_13
13.4
MONOCYTES_14
13.3
MONOCYTES_15
13.3
MONOCYTES_16
13.2
MONOCYTES_17
13.2
MONOCYTES_18
13.1
MONOCYTES_19
13.1
MONOCYTES_20
12.9
MONOCYTES_21
12.5
MONOCYTES_22
12.3
MONOCYTES_23
12.2
MONOCYTES_24
12.2
MONOCYTES_25
12.2
MONOCYTES_26
12.1
MONOCYTES_27
12.0
MONOCYTES_28
12.0
MONOCYTES_29
11.8
MONOCYTES_30
11.7
MONOCYTES_31
11.6
MONOCYTES_32
11.6
MONOCYTES_33
11.6
MONOCYTES_34
11.6
MONOCYTES_35
11.6
MONOCYTES_36
11.4
MONOCYTES_37
11.4
MONOCYTES_38
11.4
MONOCYTES_39
11.4
MONOCYTES_40
11.4
MONOCYTES_41
11.3
MONOCYTES_42
11.3
MONOCYTES_43
11.3
MONOCYTES_44
11.2
MONOCYTES_45
11.1
MONOCYTES_46
11.1
MONOCYTES_47
11.0
MONOCYTES_48
11.0
MONOCYTES_49
10.9
MONOCYTES_50
10.9
MONOCYTES_51
10.8
MONOCYTES_52
10.7
MONOCYTES_53
10.7
MONOCYTES_54
10.7
MONOCYTES_55
10.7
MONOCYTES_56
10.7
MONOCYTES_57
10.7
MONOCYTES_58
10.6
MONOCYTES_59
10.6
MONOCYTES_60
10.6
MONOCYTES_61
10.6
MONOCYTES_62
10.5
MONOCYTES_63
10.5
MONOCYTES_64
10.4
MONOCYTES_65
10.4
MONOCYTES_66
10.3
MONOCYTES_67
10.2
MONOCYTES_68
10.2
MONOCYTES_69
10.2
MONOCYTES_70
10.1
MONOCYTES_71
10.0
MONOCYTES_72
9.9
MONOCYTES_73
9.9
MONOCYTES_74
9.7
MONOCYTES_75
9.6
MONOCYTES_76
9.5
MONOCYTES_77
9.4
MONOCYTES_78
9.1
MONOCYTES_79
9.1
MONOCYTES_80
9.1
MONOCYTES_81
9.0
MONOCYTES_82
9.0
MONOCYTES_83
8.9
MONOCYTES_84
8.7
MONOCYTES_85
8.7
MONOCYTES_86
8.4
MONOCYTES_87
8.2
MONOCYTES_88
8.0
MONOCYTES_89
7.9
MONOCYTES_90
7.4
MONOCYTES_91
7.3
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Non-classical monocyte TPM: 14.7
Samples: 90
Max TPM: 24.1
Min TPM: 9.4
M2_1
24.1
M2_2
21.5
M2_3
21.2
M2_4
20.0
M2_5
19.3
M2_6
19.1
M2_7
18.8
M2_8
18.5
M2_9
18.2
M2_10
18.0
M2_11
18.0
M2_12
17.7
M2_13
17.6
M2_14
17.4
M2_15
17.3
M2_16
17.1
M2_17
17.1
M2_18
17.0
M2_19
17.0
M2_20
16.9
M2_21
16.8
M2_22
16.7
M2_23
16.5
M2_24
16.5
M2_25
16.4
M2_26
16.3
M2_27
16.2
M2_28
16.1
M2_29
16.1
M2_30
16.1
M2_31
16.0
M2_32
15.7
M2_33
15.4
M2_34
15.1
M2_35
14.9
M2_36
14.8
M2_37
14.7
M2_38
14.7
M2_39
14.6
M2_40
14.5
M2_41
14.4
M2_42
14.4
M2_43
14.3
M2_44
14.2
M2_45
14.2
M2_46
14.1
M2_47
14.1
M2_48
14.0
M2_49
14.0
M2_50
13.9
M2_51
13.9
M2_52
13.7
M2_53
13.6
M2_54
13.6
M2_55
13.5
M2_56
13.5
M2_57
13.5
M2_58
13.4
M2_59
13.4
M2_60
13.3
M2_61
13.3
M2_62
13.2
M2_63
13.2
M2_64
13.1
M2_65
13.1
M2_66
13.1
M2_67
13.0
M2_68
13.0
M2_69
12.8
M2_70
12.8
M2_71
12.8
M2_72
12.5
M2_73
12.5
M2_74
12.5
M2_75
12.5
M2_76
12.5
M2_77
12.0
M2_78
12.0
M2_79
11.9
M2_80
11.8
M2_81
11.3
M2_82
11.0
M2_83
10.9
M2_84
10.8
M2_85
10.8
M2_86
10.4
M2_87
10.3
M2_88
10.0
M2_89
9.8
M2_90
9.4
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