A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
13.9
nTPM
Schmiedel:
102.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Memory B-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.3
P10809_1017
1.3
P10809_1025
0.4
P10809_1044
0.4
P10809_1063
0.3
P10809_1092
1.2
P10809_1105
0.7
Naive B-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.1
P10809_1011
0.6
P10809_1029
0.9
P10809_1048
0.1
P10809_1067
0.6
P10809_1091
1.0
P10809_1104
0.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.1
Samples: 4
Max nTPM: 16.7
Min nTPM: 8.9
RHH5310_R3677
13.6
RHH5218_R3590
8.9
RHH5247_R3619
16.7
RHH5276_R3648
13.1
Naive B-cell nTPM: 12.3
Samples: 4
Max nTPM: 14.3
Min nTPM: 9.2
RHH5308_R3675
14.3
RHH5216_R3588
12.6
RHH5245_R3617
9.2
RHH5274_R3646
13.2
Non-switched memory B-cell nTPM: 13.9
Samples: 4
Max nTPM: 22.8
Min nTPM: 6.5
RHH5309_R3676
12.4
RHH5217_R3589
6.5
RHH5246_R3618
22.8
RHH5275_R3647
14.0
Plasmablast nTPM: 7.9
Samples: 4
Max nTPM: 10.9
Min nTPM: 4.8
RHH5312_R3679
10.9
RHH5220_R3592
4.8
RHH5249_R3621
6.3
RHH5278_R3650
9.4
Switched memory B-cell nTPM: 13.8
Samples: 4
Max nTPM: 15.3
Min nTPM: 11.0
RHH5311_R3678
14.5
RHH5219_R3591
14.2
RHH5248_R3620
11.0
RHH5277_R3649
15.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.7
Schmiedel sample id
TPM
Naive B-cell TPM: 102.7
Samples: 91
Max TPM: 159.6
Min TPM: 70.6
B_CELL_NAIVE_1
159.6
B_CELL_NAIVE_2
153.4
B_CELL_NAIVE_3
153.4
B_CELL_NAIVE_4
147.1
B_CELL_NAIVE_5
144.3
B_CELL_NAIVE_6
131.7
B_CELL_NAIVE_7
124.2
B_CELL_NAIVE_8
122.1
B_CELL_NAIVE_9
121.2
B_CELL_NAIVE_10
120.0
B_CELL_NAIVE_11
119.7
B_CELL_NAIVE_12
119.0
B_CELL_NAIVE_13
118.3
B_CELL_NAIVE_14
117.7
B_CELL_NAIVE_15
117.2
B_CELL_NAIVE_16
117.1
B_CELL_NAIVE_17
116.8
B_CELL_NAIVE_18
116.7
B_CELL_NAIVE_19
116.6
B_CELL_NAIVE_20
115.9
B_CELL_NAIVE_21
115.4
B_CELL_NAIVE_22
114.7
B_CELL_NAIVE_23
114.3
B_CELL_NAIVE_24
112.8
B_CELL_NAIVE_25
112.4
B_CELL_NAIVE_26
112.1
B_CELL_NAIVE_27
110.6
B_CELL_NAIVE_28
110.5
B_CELL_NAIVE_29
110.0
B_CELL_NAIVE_30
109.6
B_CELL_NAIVE_31
107.8
B_CELL_NAIVE_32
107.4
B_CELL_NAIVE_33
107.0
B_CELL_NAIVE_34
106.1
B_CELL_NAIVE_35
106.0
B_CELL_NAIVE_36
105.9
B_CELL_NAIVE_37
105.1
B_CELL_NAIVE_38
103.3
B_CELL_NAIVE_39
103.1
B_CELL_NAIVE_40
102.9
B_CELL_NAIVE_41
102.5
B_CELL_NAIVE_42
102.5
B_CELL_NAIVE_43
102.3
B_CELL_NAIVE_44
101.5
B_CELL_NAIVE_45
101.3
B_CELL_NAIVE_46
99.9
B_CELL_NAIVE_47
99.4
B_CELL_NAIVE_48
99.2
B_CELL_NAIVE_49
98.2
B_CELL_NAIVE_50
97.7
B_CELL_NAIVE_51
97.7
B_CELL_NAIVE_52
97.1
B_CELL_NAIVE_53
97.1
B_CELL_NAIVE_54
95.7
B_CELL_NAIVE_55
94.8
B_CELL_NAIVE_56
94.5
B_CELL_NAIVE_57
94.2
B_CELL_NAIVE_58
94.2
B_CELL_NAIVE_59
93.1
B_CELL_NAIVE_60
92.5
B_CELL_NAIVE_61
92.1
B_CELL_NAIVE_62
91.9
B_CELL_NAIVE_63
91.3
B_CELL_NAIVE_64
91.3
B_CELL_NAIVE_65
90.7
B_CELL_NAIVE_66
89.7
B_CELL_NAIVE_67
89.7
B_CELL_NAIVE_68
89.6
B_CELL_NAIVE_69
89.4
B_CELL_NAIVE_70
89.1
B_CELL_NAIVE_71
88.9
B_CELL_NAIVE_72
88.5
B_CELL_NAIVE_73
87.6
B_CELL_NAIVE_74
87.5
B_CELL_NAIVE_75
87.0
B_CELL_NAIVE_76
87.0
B_CELL_NAIVE_77
86.0
B_CELL_NAIVE_78
86.0
B_CELL_NAIVE_79
85.9
B_CELL_NAIVE_80
85.8
B_CELL_NAIVE_81
84.8
B_CELL_NAIVE_82
84.3
B_CELL_NAIVE_83
82.9
B_CELL_NAIVE_84
82.2
B_CELL_NAIVE_85
81.9
B_CELL_NAIVE_86
81.3
B_CELL_NAIVE_87
80.7
B_CELL_NAIVE_88
80.3
B_CELL_NAIVE_89
79.5
B_CELL_NAIVE_90
74.0
B_CELL_NAIVE_91
70.6
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The Human Protein Atlas project is funded
