A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.5
nTPM
Monaco:
176.3
nTPM
Schmiedel:
76.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
HPA sample
nTPM
Classical monocyte nTPM: 4.3
Samples: 6
Max nTPM: 5.3
Min nTPM: 3.5
P10809_1003
3.5
P10809_1020
3.8
P10809_1039
4.9
P10809_1058
3.6
P10809_1080
5.3
P10809_1107
4.6
Intermediate monocyte nTPM: 7.7
Samples: 6
Max nTPM: 14.0
Min nTPM: 1.5
P10809_1004
10.5
P10809_1023
14.0
P10809_1042
6.1
P10809_1061
1.5
P10809_1081
6.5
P10809_1108
7.8
Non-classical monocyte nTPM: 12.5
Samples: 5
Max nTPM: 31.5
Min nTPM: 5.4
P10809_1005
6.8
P10809_1053
11.0
P10809_1072
31.5
P10809_1082
7.8
P10809_1109
5.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.3
Monaco sample
nTPM
Classical monocyte nTPM: 76.9
Samples: 4
Max nTPM: 97.6
Min nTPM: 41.5
RHH5313_R3680
78.3
RHH5221_R3593
90.4
RHH5250_R3622
97.6
RHH5279_R3651
41.5
Intermediate monocyte nTPM: 159.9
Samples: 4
Max nTPM: 189.0
Min nTPM: 128.3
RHH5314_R3681
189.0
RHH5222_R3594
158.9
RHH5251_R3623
163.4
RHH5280_R3652
128.3
Non-classical monocyte nTPM: 176.3
Samples: 4
Max nTPM: 237.5
Min nTPM: 102.6
RHH5315_R3682
141.3
RHH5223_R3595
237.5
RHH5252_R3624
223.7
RHH5281_R3653
102.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.0
Schmiedel sample id
TPM
Classical monocyte TPM: 35.9
Samples: 91
Max TPM: 53.8
Min TPM: 16.8
MONOCYTES_1
53.8
MONOCYTES_2
52.2
MONOCYTES_3
52.1
MONOCYTES_4
49.1
MONOCYTES_5
48.1
MONOCYTES_6
46.9
MONOCYTES_7
45.6
MONOCYTES_8
45.2
MONOCYTES_9
45.1
MONOCYTES_10
44.5
MONOCYTES_11
44.5
MONOCYTES_12
44.2
MONOCYTES_13
43.3
MONOCYTES_14
43.0
MONOCYTES_15
42.5
MONOCYTES_16
42.5
MONOCYTES_17
41.9
MONOCYTES_18
41.8
MONOCYTES_19
41.7
MONOCYTES_20
40.6
MONOCYTES_21
40.1
MONOCYTES_22
40.1
MONOCYTES_23
39.9
MONOCYTES_24
39.7
MONOCYTES_25
39.5
MONOCYTES_26
39.3
MONOCYTES_27
39.1
MONOCYTES_28
38.9
MONOCYTES_29
38.9
MONOCYTES_30
38.8
MONOCYTES_31
38.7
MONOCYTES_32
38.6
MONOCYTES_33
38.5
MONOCYTES_34
38.5
MONOCYTES_35
38.0
MONOCYTES_36
38.0
MONOCYTES_37
38.0
MONOCYTES_38
37.8
MONOCYTES_39
37.8
MONOCYTES_40
37.8
MONOCYTES_41
36.8
MONOCYTES_42
36.7
MONOCYTES_43
36.2
MONOCYTES_44
35.9
MONOCYTES_45
35.9
MONOCYTES_46
35.9
MONOCYTES_47
35.6
MONOCYTES_48
35.6
MONOCYTES_49
35.5
MONOCYTES_50
34.8
MONOCYTES_51
34.7
MONOCYTES_52
34.4
MONOCYTES_53
34.4
MONOCYTES_54
34.3
MONOCYTES_55
34.2
MONOCYTES_56
33.3
MONOCYTES_57
33.0
MONOCYTES_58
32.8
MONOCYTES_59
32.8
MONOCYTES_60
32.7
MONOCYTES_61
32.6
MONOCYTES_62
32.5
MONOCYTES_63
32.4
MONOCYTES_64
32.3
MONOCYTES_65
32.3
MONOCYTES_66
32.2
MONOCYTES_67
31.8
MONOCYTES_68
31.7
MONOCYTES_69
31.1
MONOCYTES_70
31.0
MONOCYTES_71
30.0
MONOCYTES_72
30.0
MONOCYTES_73
29.7
MONOCYTES_74
29.5
MONOCYTES_75
29.3
MONOCYTES_76
29.3
MONOCYTES_77
28.9
MONOCYTES_78
28.4
MONOCYTES_79
28.2
MONOCYTES_80
28.0
MONOCYTES_81
27.9
MONOCYTES_82
27.7
MONOCYTES_83
27.6
MONOCYTES_84
27.4
MONOCYTES_85
27.1
MONOCYTES_86
26.7
MONOCYTES_87
26.1
MONOCYTES_88
26.0
MONOCYTES_89
22.5
MONOCYTES_90
22.0
MONOCYTES_91
16.8
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Non-classical monocyte TPM: 76.0
Samples: 90
Max TPM: 114.6
Min TPM: 51.8
M2_1
114.6
M2_2
105.0
M2_3
101.0
M2_4
99.6
M2_5
97.9
M2_6
97.7
M2_7
97.5
M2_8
97.1
M2_9
95.6
M2_10
95.2
M2_11
94.6
M2_12
92.5
M2_13
90.5
M2_14
90.2
M2_15
90.1
M2_16
89.6
M2_17
88.6
M2_18
88.5
M2_19
87.5
M2_20
86.7
M2_21
86.6
M2_22
86.1
M2_23
84.7
M2_24
83.2
M2_25
83.1
M2_26
82.6
M2_27
82.6
M2_28
82.1
M2_29
81.0
M2_30
80.7
M2_31
79.6
M2_32
79.3
M2_33
78.9
M2_34
78.4
M2_35
78.3
M2_36
77.7
M2_37
77.6
M2_38
76.6
M2_39
75.9
M2_40
75.2
M2_41
75.0
M2_42
74.3
M2_43
74.1
M2_44
74.0
M2_45
73.8
M2_46
73.5
M2_47
72.6
M2_48
72.6
M2_49
72.5
M2_50
72.1
M2_51
71.2
M2_52
71.1
M2_53
70.9
M2_54
70.8
M2_55
70.7
M2_56
70.6
M2_57
70.6
M2_58
69.9
M2_59
69.5
M2_60
69.4
M2_61
69.1
M2_62
68.9
M2_63
68.7
M2_64
68.7
M2_65
68.5
M2_66
68.4
M2_67
68.2
M2_68
67.8
M2_69
67.7
M2_70
67.6
M2_71
65.8
M2_72
65.7
M2_73
65.5
M2_74
65.3
M2_75
64.6
M2_76
62.3
M2_77
62.2
M2_78
62.1
M2_79
62.1
M2_80
61.4
M2_81
60.9
M2_82
59.7
M2_83
59.3
M2_84
58.5
M2_85
57.5
M2_86
57.3
M2_87
54.9
M2_88
54.3
M2_89
52.4
M2_90
51.8
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