A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.9
nTPM
Monaco:
24.2
nTPM
Schmiedel:
79.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.9
HPA sample
nTPM
Classical monocyte nTPM: 11.9
Samples: 6
Max nTPM: 22.0
Min nTPM: 3.2
P10809_1003
3.2
P10809_1020
9.3
P10809_1039
7.6
P10809_1058
22.0
P10809_1080
14.8
P10809_1107
14.3
Intermediate monocyte nTPM: 6.5
Samples: 6
Max nTPM: 17.0
Min nTPM: 2.8
P10809_1004
4.4
P10809_1023
3.7
P10809_1042
2.8
P10809_1061
5.1
P10809_1081
17.0
P10809_1108
6.2
Non-classical monocyte nTPM: 8.8
Samples: 5
Max nTPM: 25.6
Min nTPM: 2.1
P10809_1005
2.6
P10809_1053
2.1
P10809_1072
25.6
P10809_1082
9.1
P10809_1109
4.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Monaco sample
nTPM
Classical monocyte nTPM: 18.0
Samples: 4
Max nTPM: 18.5
Min nTPM: 16.9
RHH5313_R3680
16.9
RHH5221_R3593
18.2
RHH5250_R3622
18.5
RHH5279_R3651
18.2
Intermediate monocyte nTPM: 22.0
Samples: 4
Max nTPM: 30.5
Min nTPM: 16.7
RHH5314_R3681
19.7
RHH5222_R3594
30.5
RHH5251_R3623
21.2
RHH5280_R3652
16.7
Non-classical monocyte nTPM: 24.2
Samples: 4
Max nTPM: 32.2
Min nTPM: 19.3
RHH5315_R3682
32.2
RHH5223_R3595
19.3
RHH5252_R3624
21.7
RHH5281_R3653
23.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.2
Schmiedel sample id
TPM
Classical monocyte TPM: 32.0
Samples: 91
Max TPM: 43.6
Min TPM: 21.3
MONOCYTES_1
43.6
MONOCYTES_2
43.0
MONOCYTES_3
42.9
MONOCYTES_4
41.3
MONOCYTES_5
40.7
MONOCYTES_6
40.5
MONOCYTES_7
40.1
MONOCYTES_8
40.0
MONOCYTES_9
39.9
MONOCYTES_10
39.3
MONOCYTES_11
39.3
MONOCYTES_12
39.1
MONOCYTES_13
38.8
MONOCYTES_14
38.6
MONOCYTES_15
37.8
MONOCYTES_16
37.6
MONOCYTES_17
37.1
MONOCYTES_18
36.9
MONOCYTES_19
36.9
MONOCYTES_20
36.4
MONOCYTES_21
36.2
MONOCYTES_22
35.8
MONOCYTES_23
35.3
MONOCYTES_24
35.1
MONOCYTES_25
34.9
MONOCYTES_26
34.6
MONOCYTES_27
34.5
MONOCYTES_28
34.1
MONOCYTES_29
33.7
MONOCYTES_30
33.7
MONOCYTES_31
33.7
MONOCYTES_32
33.7
MONOCYTES_33
33.5
MONOCYTES_34
33.4
MONOCYTES_35
33.3
MONOCYTES_36
33.3
MONOCYTES_37
33.3
MONOCYTES_38
33.2
MONOCYTES_39
32.9
MONOCYTES_40
32.9
MONOCYTES_41
32.5
MONOCYTES_42
32.4
MONOCYTES_43
32.4
MONOCYTES_44
32.3
MONOCYTES_45
32.3
MONOCYTES_46
32.2
MONOCYTES_47
32.0
MONOCYTES_48
31.9
MONOCYTES_49
31.9
MONOCYTES_50
31.6
MONOCYTES_51
31.4
MONOCYTES_52
31.2
MONOCYTES_53
31.2
MONOCYTES_54
31.0
MONOCYTES_55
30.7
MONOCYTES_56
30.3
MONOCYTES_57
29.9
MONOCYTES_58
29.6
MONOCYTES_59
29.3
MONOCYTES_60
29.3
MONOCYTES_61
29.2
MONOCYTES_62
29.0
MONOCYTES_63
28.9
MONOCYTES_64
28.9
MONOCYTES_65
28.8
MONOCYTES_66
28.6
MONOCYTES_67
28.5
MONOCYTES_68
28.2
MONOCYTES_69
27.9
MONOCYTES_70
27.8
MONOCYTES_71
27.3
MONOCYTES_72
27.2
MONOCYTES_73
27.1
MONOCYTES_74
26.8
MONOCYTES_75
26.7
MONOCYTES_76
26.4
MONOCYTES_77
26.4
MONOCYTES_78
26.3
MONOCYTES_79
26.1
MONOCYTES_80
25.3
MONOCYTES_81
25.1
MONOCYTES_82
25.0
MONOCYTES_83
24.9
MONOCYTES_84
24.9
MONOCYTES_85
24.7
MONOCYTES_86
24.4
MONOCYTES_87
23.9
MONOCYTES_88
23.3
MONOCYTES_89
23.1
MONOCYTES_90
22.5
MONOCYTES_91
21.3
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Non-classical monocyte TPM: 79.2
Samples: 90
Max TPM: 116.5
Min TPM: 51.0
M2_1
116.5
M2_2
114.8
M2_3
112.8
M2_4
103.6
M2_5
103.2
M2_6
102.0
M2_7
101.6
M2_8
100.3
M2_9
99.6
M2_10
98.0
M2_11
97.7
M2_12
96.8
M2_13
96.3
M2_14
94.6
M2_15
94.4
M2_16
92.9
M2_17
92.1
M2_18
91.8
M2_19
91.6
M2_20
90.6
M2_21
89.7
M2_22
89.3
M2_23
88.0
M2_24
87.9
M2_25
86.9
M2_26
85.8
M2_27
85.7
M2_28
85.4
M2_29
85.0
M2_30
84.8
M2_31
84.6
M2_32
83.8
M2_33
83.2
M2_34
83.1
M2_35
83.1
M2_36
82.7
M2_37
82.3
M2_38
81.7
M2_39
81.1
M2_40
79.8
M2_41
79.7
M2_42
79.7
M2_43
79.3
M2_44
78.8
M2_45
78.7
M2_46
77.3
M2_47
77.2
M2_48
77.1
M2_49
76.8
M2_50
76.5
M2_51
75.8
M2_52
75.7
M2_53
75.6
M2_54
75.4
M2_55
75.3
M2_56
75.1
M2_57
74.7
M2_58
73.1
M2_59
72.0
M2_60
71.7
M2_61
71.5
M2_62
71.5
M2_63
71.4
M2_64
71.0
M2_65
70.0
M2_66
70.0
M2_67
69.3
M2_68
69.0
M2_69
68.1
M2_70
66.8
M2_71
66.6
M2_72
65.5
M2_73
65.0
M2_74
64.8
M2_75
63.2
M2_76
63.2
M2_77
63.2
M2_78
63.2
M2_79
62.8
M2_80
62.4
M2_81
62.3
M2_82
62.1
M2_83
61.3
M2_84
60.4
M2_85
59.8
M2_86
59.6
M2_87
57.8
M2_88
54.7
M2_89
51.0
M2_90
51.0
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