A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
35.5
nTPM
Schmiedel:
88.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.0
Min nTPM: 1.0
P10809_1003
2.0
P10809_1020
1.3
P10809_1039
1.0
P10809_1058
1.2
P10809_1080
1.3
P10809_1107
1.6
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.6
P10809_1004
2.5
P10809_1023
2.1
P10809_1042
3.3
P10809_1061
3.7
P10809_1081
0.6
P10809_1108
1.3
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.6
Min nTPM: 0.0
P10809_1005
2.5
P10809_1053
1.0
P10809_1072
0.0
P10809_1082
0.3
P10809_1109
2.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
Monaco sample
nTPM
Classical monocyte nTPM: 28.0
Samples: 4
Max nTPM: 29.4
Min nTPM: 26.7
RHH5313_R3680
26.7
RHH5221_R3593
28.6
RHH5250_R3622
27.5
RHH5279_R3651
29.4
Intermediate monocyte nTPM: 29.8
Samples: 4
Max nTPM: 37.9
Min nTPM: 19.3
RHH5314_R3681
26.0
RHH5222_R3594
37.9
RHH5251_R3623
19.3
RHH5280_R3652
36.0
Non-classical monocyte nTPM: 35.5
Samples: 4
Max nTPM: 55.5
Min nTPM: 26.3
RHH5315_R3682
28.4
RHH5223_R3595
55.5
RHH5252_R3624
26.3
RHH5281_R3653
31.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.0
Schmiedel sample id
TPM
Classical monocyte TPM: 47.7
Samples: 91
Max TPM: 62.6
Min TPM: 32.4
MONOCYTES_1
62.6
MONOCYTES_2
61.2
MONOCYTES_3
60.0
MONOCYTES_4
59.7
MONOCYTES_5
59.7
MONOCYTES_6
59.5
MONOCYTES_7
59.1
MONOCYTES_8
58.1
MONOCYTES_9
58.0
MONOCYTES_10
57.7
MONOCYTES_11
57.5
MONOCYTES_12
57.0
MONOCYTES_13
56.8
MONOCYTES_14
55.5
MONOCYTES_15
55.2
MONOCYTES_16
54.7
MONOCYTES_17
54.1
MONOCYTES_18
54.1
MONOCYTES_19
54.0
MONOCYTES_20
53.9
MONOCYTES_21
53.6
MONOCYTES_22
53.2
MONOCYTES_23
53.0
MONOCYTES_24
52.8
MONOCYTES_25
52.8
MONOCYTES_26
52.5
MONOCYTES_27
52.5
MONOCYTES_28
52.1
MONOCYTES_29
52.0
MONOCYTES_30
51.7
MONOCYTES_31
51.6
MONOCYTES_32
51.1
MONOCYTES_33
50.5
MONOCYTES_34
50.1
MONOCYTES_35
50.1
MONOCYTES_36
50.0
MONOCYTES_37
49.6
MONOCYTES_38
49.5
MONOCYTES_39
49.4
MONOCYTES_40
49.2
MONOCYTES_41
48.7
MONOCYTES_42
48.6
MONOCYTES_43
48.2
MONOCYTES_44
47.9
MONOCYTES_45
47.7
MONOCYTES_46
47.6
MONOCYTES_47
47.3
MONOCYTES_48
47.1
MONOCYTES_49
47.1
MONOCYTES_50
47.1
MONOCYTES_51
45.5
MONOCYTES_52
45.5
MONOCYTES_53
45.1
MONOCYTES_54
45.1
MONOCYTES_55
44.7
MONOCYTES_56
44.1
MONOCYTES_57
43.9
MONOCYTES_58
43.8
MONOCYTES_59
43.7
MONOCYTES_60
43.6
MONOCYTES_61
43.5
MONOCYTES_62
43.4
MONOCYTES_63
43.4
MONOCYTES_64
43.3
MONOCYTES_65
43.3
MONOCYTES_66
43.2
MONOCYTES_67
43.1
MONOCYTES_68
42.9
MONOCYTES_69
42.6
MONOCYTES_70
42.4
MONOCYTES_71
42.3
MONOCYTES_72
42.2
MONOCYTES_73
41.9
MONOCYTES_74
41.5
MONOCYTES_75
41.4
MONOCYTES_76
40.8
MONOCYTES_77
40.7
MONOCYTES_78
40.5
MONOCYTES_79
40.2
MONOCYTES_80
38.7
MONOCYTES_81
38.5
MONOCYTES_82
38.5
MONOCYTES_83
37.8
MONOCYTES_84
37.6
MONOCYTES_85
37.0
MONOCYTES_86
36.3
MONOCYTES_87
36.2
MONOCYTES_88
35.0
MONOCYTES_89
34.9
MONOCYTES_90
33.7
MONOCYTES_91
32.4
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Non-classical monocyte TPM: 88.0
Samples: 90
Max TPM: 134.1
Min TPM: 55.3
M2_1
134.1
M2_2
132.0
M2_3
129.4
M2_4
124.8
M2_5
124.1
M2_6
118.7
M2_7
115.4
M2_8
114.7
M2_9
109.5
M2_10
108.8
M2_11
108.3
M2_12
108.1
M2_13
106.7
M2_14
106.3
M2_15
105.7
M2_16
104.8
M2_17
103.7
M2_18
100.3
M2_19
100.1
M2_20
99.1
M2_21
97.9
M2_22
96.8
M2_23
96.1
M2_24
95.9
M2_25
95.7
M2_26
95.1
M2_27
94.5
M2_28
94.5
M2_29
94.2
M2_30
94.1
M2_31
93.9
M2_32
93.6
M2_33
93.1
M2_34
92.7
M2_35
91.7
M2_36
91.3
M2_37
91.0
M2_38
90.9
M2_39
90.4
M2_40
90.1
M2_41
89.1
M2_42
88.5
M2_43
88.4
M2_44
88.3
M2_45
88.2
M2_46
86.0
M2_47
85.6
M2_48
84.1
M2_49
84.0
M2_50
83.9
M2_51
83.7
M2_52
83.6
M2_53
82.5
M2_54
80.1
M2_55
79.4
M2_56
78.9
M2_57
78.9
M2_58
78.7
M2_59
78.7
M2_60
78.3
M2_61
77.9
M2_62
76.3
M2_63
76.2
M2_64
76.1
M2_65
76.1
M2_66
75.9
M2_67
75.7
M2_68
75.7
M2_69
75.5
M2_70
75.0
M2_71
74.4
M2_72
74.0
M2_73
74.0
M2_74
73.7
M2_75
73.1
M2_76
71.5
M2_77
71.0
M2_78
70.7
M2_79
70.5
M2_80
70.3
M2_81
69.8
M2_82
69.2
M2_83
66.7
M2_84
65.1
M2_85
64.6
M2_86
64.1
M2_87
62.9
M2_88
62.8
M2_89
61.4
M2_90
55.3
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