A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
13.7
nTPM
Schmiedel:
40.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
Memory B-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.3
P10809_1017
0.4
P10809_1025
0.3
P10809_1044
0.9
P10809_1063
0.6
P10809_1092
0.6
P10809_1105
1.1
Naive B-cell nTPM: 0.4
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.0
P10809_1011
1.0
P10809_1029
0.2
P10809_1048
0.0
P10809_1067
0.6
P10809_1091
0.3
P10809_1104
0.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.7
Samples: 4
Max nTPM: 21.7
Min nTPM: 6.4
RHH5310_R3677
6.4
RHH5218_R3590
14.2
RHH5247_R3619
21.7
RHH5276_R3648
12.5
Naive B-cell nTPM: 12.3
Samples: 4
Max nTPM: 22.5
Min nTPM: 3.5
RHH5308_R3675
6.6
RHH5216_R3588
3.5
RHH5245_R3617
16.7
RHH5274_R3646
22.5
Non-switched memory B-cell nTPM: 7.7
Samples: 4
Max nTPM: 12.8
Min nTPM: 2.5
RHH5309_R3676
8.4
RHH5217_R3589
2.5
RHH5246_R3618
6.9
RHH5275_R3647
12.8
Plasmablast nTPM: 5.2
Samples: 4
Max nTPM: 8.9
Min nTPM: 3.5
RHH5312_R3679
3.5
RHH5220_R3592
3.7
RHH5249_R3621
8.9
RHH5278_R3650
4.5
Switched memory B-cell nTPM: 10.5
Samples: 4
Max nTPM: 15.9
Min nTPM: 3.0
RHH5311_R3678
3.0
RHH5219_R3591
9.1
RHH5248_R3620
15.9
RHH5277_R3649
14.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.7
Schmiedel sample id
TPM
Naive B-cell TPM: 40.7
Samples: 91
Max TPM: 66.0
Min TPM: 24.6
B_CELL_NAIVE_1
66.0
B_CELL_NAIVE_2
58.3
B_CELL_NAIVE_3
56.2
B_CELL_NAIVE_4
55.7
B_CELL_NAIVE_5
54.2
B_CELL_NAIVE_6
54.2
B_CELL_NAIVE_7
52.8
B_CELL_NAIVE_8
51.4
B_CELL_NAIVE_9
51.0
B_CELL_NAIVE_10
50.2
B_CELL_NAIVE_11
49.9
B_CELL_NAIVE_12
49.8
B_CELL_NAIVE_13
49.0
B_CELL_NAIVE_14
45.4
B_CELL_NAIVE_15
45.2
B_CELL_NAIVE_16
45.0
B_CELL_NAIVE_17
44.9
B_CELL_NAIVE_18
44.6
B_CELL_NAIVE_19
44.5
B_CELL_NAIVE_20
44.4
B_CELL_NAIVE_21
44.1
B_CELL_NAIVE_22
44.1
B_CELL_NAIVE_23
43.8
B_CELL_NAIVE_24
43.6
B_CELL_NAIVE_25
43.4
B_CELL_NAIVE_26
43.3
B_CELL_NAIVE_27
43.2
B_CELL_NAIVE_28
42.6
B_CELL_NAIVE_29
42.6
B_CELL_NAIVE_30
42.3
B_CELL_NAIVE_31
42.2
B_CELL_NAIVE_32
41.6
B_CELL_NAIVE_33
41.4
B_CELL_NAIVE_34
41.2
B_CELL_NAIVE_35
41.2
B_CELL_NAIVE_36
41.2
B_CELL_NAIVE_37
41.1
B_CELL_NAIVE_38
40.9
B_CELL_NAIVE_39
40.9
B_CELL_NAIVE_40
40.7
B_CELL_NAIVE_41
40.7
B_CELL_NAIVE_42
40.7
B_CELL_NAIVE_43
40.7
B_CELL_NAIVE_44
40.5
B_CELL_NAIVE_45
40.1
B_CELL_NAIVE_46
40.1
B_CELL_NAIVE_47
40.0
B_CELL_NAIVE_48
39.9
B_CELL_NAIVE_49
39.8
B_CELL_NAIVE_50
39.6
B_CELL_NAIVE_51
39.5
B_CELL_NAIVE_52
39.0
B_CELL_NAIVE_53
39.0
B_CELL_NAIVE_54
38.8
B_CELL_NAIVE_55
38.3
B_CELL_NAIVE_56
38.1
B_CELL_NAIVE_57
37.9
B_CELL_NAIVE_58
37.7
B_CELL_NAIVE_59
37.6
B_CELL_NAIVE_60
37.2
B_CELL_NAIVE_61
37.1
B_CELL_NAIVE_62
36.8
B_CELL_NAIVE_63
36.8
B_CELL_NAIVE_64
36.7
B_CELL_NAIVE_65
36.7
B_CELL_NAIVE_66
36.5
B_CELL_NAIVE_67
36.5
B_CELL_NAIVE_68
36.4
B_CELL_NAIVE_69
36.2
B_CELL_NAIVE_70
36.1
B_CELL_NAIVE_71
36.0
B_CELL_NAIVE_72
35.9
B_CELL_NAIVE_73
35.9
B_CELL_NAIVE_74
35.8
B_CELL_NAIVE_75
35.7
B_CELL_NAIVE_76
35.4
B_CELL_NAIVE_77
35.3
B_CELL_NAIVE_78
35.1
B_CELL_NAIVE_79
34.7
B_CELL_NAIVE_80
34.7
B_CELL_NAIVE_81
34.6
B_CELL_NAIVE_82
34.4
B_CELL_NAIVE_83
34.3
B_CELL_NAIVE_84
33.5
B_CELL_NAIVE_85
32.8
B_CELL_NAIVE_86
32.3
B_CELL_NAIVE_87
32.0
B_CELL_NAIVE_88
31.8
B_CELL_NAIVE_89
26.8
B_CELL_NAIVE_90
25.3
B_CELL_NAIVE_91
24.6
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