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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • BCKDHB
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:7.9 nTPM
HPA Brain:21.3 nTPM
GTEx:7.9 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Macaque:10.6 nTPM
Mouse:23.1 nTPM
Rat:19.9 nTPM
Pig:20.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.3
Sample id Sample description nTPM
Basal amygdala
nTPM: 19.7
2110 Male, age 80, left hemisphere 22.3
1955 Male, age 76, both hemispheres 22.1
2609 Male, age 75, right hemisphere 21.6
2685 Female, age 94, left hemisphere 20.1
2243 Female, age 91, right hemisphere 18.5
2827 Female, age 67, right hemisphere 13.6
Central amygdala
nTPM: 21.3
1905 Male, age 76, both hemispheres 27.6
2701 Female, age 91, right hemisphere 20.4
2239 Male, age 80, left hemisphere 19.9
2515 Male, age 75, right hemisphere 19.7
2826 Female, age 94, left hemisphere 19.1
Corticomedial amygdala
nTPM: 19.8
2829 Male, age 80, left hemisphere 23.7
2429 Female, age 94, left hemisphere 22.6
2428 Male, age 75, right hemisphere 20.7
2242 Female, age 91, right hemisphere 19.0
2240 Male, age 76, both hemispheres 18.7
2535 Female, age 67, right hemisphere 13.7
Lateral amygdala
nTPM: 18.7
1883 Male, age 76, both hemispheres 24.8
2516 Male, age 75, right hemisphere 21.5
2534 Female, age 94, left hemisphere 19.1
2255 Female, age 91, right hemisphere 17.6
2256 Male, age 80, left hemisphere 17.1
2830 Female, age 67, right hemisphere 12.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 7.9
Samples: 181

Max nTPM: 19.8
Min nTPM: 1.9
Std nTPM: 2.6
Median nTPM: 7.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 19.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 17.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 14.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 13.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 12.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 12.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 12.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 12.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 12.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 12.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 11.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 11.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 11.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 11.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 11.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 11.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 11.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 11.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 11.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 10.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 10.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 10.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 10.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 10.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 10.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 10.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 10.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 10.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 10.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 10.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 10.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 10.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 10.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 10.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 9.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 9.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 9.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 9.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 9.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 9.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 9.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 9.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 9.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 9.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 9.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 9.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 9.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 9.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 9.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 9.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 9.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 9.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 8.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 8.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 8.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 8.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 8.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 8.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 8.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 8.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 8.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 8.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 8.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 8.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 8.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 8.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 8.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 8.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 8.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 8.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 8.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 8.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 8.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 8.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 8.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 8.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 7.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 7.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 7.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 7.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 7.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 7.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 7.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 7.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 7.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 7.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 7.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 7.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 7.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 7.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 7.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 7.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 7.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 7.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 7.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 7.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 7.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 7.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 7.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 7.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 7.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 7.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 7.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 7.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 6.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 6.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 6.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 6.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 6.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 6.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 6.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 6.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 6.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 6.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 6.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 6.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 6.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 6.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 6.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 6.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 6.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 6.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 6.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 6.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 6.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 6.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 6.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 6.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 6.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 6.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 6.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 6.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 6.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 5.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 5.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 5.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 5.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 5.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 5.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 5.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 5.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 5.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 5.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 5.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 5.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 5.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 5.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 5.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 5.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 4.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 4.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 4.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 4.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 4.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 4.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 4.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 4.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 4.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 4.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 4.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 3.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 3.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.2
FF:10151-102I7 76 years, female 29.2

AMYGDALA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.6
Macaque sample Sample description nTPM
Amygdala
nTPM: 10.6
Samples: 2

Max nTPM: 11.1
Min nTPM: 10.1
Sample A 10.1
Sample B 11.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.6
Pig sample Sample description nTPM
Amygdala
nTPM: 20.6
Samples: 4

Max nTPM: 23.8
Min nTPM: 16.6
Sample A Female 23.8
Sample B Female 23.8
Sample C Male 18.2
Sample D Male 16.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 23.1
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.2
Sample A 25.0
Sample B 21.9
Sample C 24.2
Sample D 21.2

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.9
Rat sample Sample description nTPM
Amygdala
nTPM: 19.9
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.0
Sample A 22.5
Sample A 20.6
Sample A 20.4
Sample A 16.0

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