A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
40.3
nTPM
Schmiedel:
88.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.5
P10809_1003
0.9
P10809_1020
0.5
P10809_1039
1.4
P10809_1058
0.5
P10809_1080
1.3
P10809_1107
0.7
Intermediate monocyte nTPM: 4.0
Samples: 6
Max nTPM: 4.8
Min nTPM: 3.1
P10809_1004
3.5
P10809_1023
4.5
P10809_1042
4.8
P10809_1061
4.8
P10809_1081
3.1
P10809_1108
3.3
Non-classical monocyte nTPM: 3.4
Samples: 5
Max nTPM: 5.5
Min nTPM: 1.2
P10809_1005
3.4
P10809_1053
5.5
P10809_1072
1.2
P10809_1082
2.4
P10809_1109
4.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.3
Monaco sample
nTPM
Classical monocyte nTPM: 12.0
Samples: 4
Max nTPM: 20.1
Min nTPM: 4.2
RHH5313_R3680
20.1
RHH5221_R3593
12.3
RHH5250_R3622
4.2
RHH5279_R3651
11.4
Intermediate monocyte nTPM: 30.3
Samples: 4
Max nTPM: 45.2
Min nTPM: 20.7
RHH5314_R3681
32.4
RHH5222_R3594
45.2
RHH5251_R3623
20.7
RHH5280_R3652
22.8
Non-classical monocyte nTPM: 40.3
Samples: 4
Max nTPM: 56.3
Min nTPM: 19.8
RHH5315_R3682
47.1
RHH5223_R3595
56.3
RHH5252_R3624
37.8
RHH5281_R3653
19.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.7
Schmiedel sample id
TPM
Classical monocyte TPM: 22.4
Samples: 91
Max TPM: 29.8
Min TPM: 13.3
MONOCYTES_1
29.8
MONOCYTES_2
29.4
MONOCYTES_3
29.2
MONOCYTES_4
28.9
MONOCYTES_5
28.7
MONOCYTES_6
28.2
MONOCYTES_7
28.0
MONOCYTES_8
27.3
MONOCYTES_9
27.2
MONOCYTES_10
27.1
MONOCYTES_11
26.4
MONOCYTES_12
26.0
MONOCYTES_13
25.8
MONOCYTES_14
25.3
MONOCYTES_15
25.3
MONOCYTES_16
25.2
MONOCYTES_17
25.2
MONOCYTES_18
25.1
MONOCYTES_19
25.1
MONOCYTES_20
24.7
MONOCYTES_21
24.6
MONOCYTES_22
24.6
MONOCYTES_23
24.5
MONOCYTES_24
24.5
MONOCYTES_25
24.4
MONOCYTES_26
24.4
MONOCYTES_27
24.3
MONOCYTES_28
24.2
MONOCYTES_29
24.2
MONOCYTES_30
24.1
MONOCYTES_31
24.0
MONOCYTES_32
23.8
MONOCYTES_33
23.8
MONOCYTES_34
23.6
MONOCYTES_35
23.6
MONOCYTES_36
23.5
MONOCYTES_37
23.4
MONOCYTES_38
23.3
MONOCYTES_39
23.1
MONOCYTES_40
23.1
MONOCYTES_41
23.0
MONOCYTES_42
22.9
MONOCYTES_43
22.8
MONOCYTES_44
22.6
MONOCYTES_45
22.5
MONOCYTES_46
22.4
MONOCYTES_47
22.3
MONOCYTES_48
22.1
MONOCYTES_49
22.1
MONOCYTES_50
22.0
MONOCYTES_51
21.9
MONOCYTES_52
21.8
MONOCYTES_53
21.7
MONOCYTES_54
21.6
MONOCYTES_55
21.5
MONOCYTES_56
21.3
MONOCYTES_57
21.2
MONOCYTES_58
21.1
MONOCYTES_59
21.1
MONOCYTES_60
21.0
MONOCYTES_61
20.9
MONOCYTES_62
20.8
MONOCYTES_63
20.7
MONOCYTES_64
20.6
MONOCYTES_65
20.6
MONOCYTES_66
20.6
MONOCYTES_67
20.4
MONOCYTES_68
20.4
MONOCYTES_69
20.3
MONOCYTES_70
20.2
MONOCYTES_71
20.1
MONOCYTES_72
20.1
MONOCYTES_73
20.0
MONOCYTES_74
20.0
MONOCYTES_75
19.9
MONOCYTES_76
19.9
MONOCYTES_77
19.6
MONOCYTES_78
19.4
MONOCYTES_79
18.8
MONOCYTES_80
18.6
MONOCYTES_81
18.5
MONOCYTES_82
18.4
MONOCYTES_83
18.2
MONOCYTES_84
17.8
MONOCYTES_85
17.6
MONOCYTES_86
17.0
MONOCYTES_87
16.8
MONOCYTES_88
14.7
MONOCYTES_89
14.6
MONOCYTES_90
14.6
MONOCYTES_91
13.3
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Non-classical monocyte TPM: 88.7
Samples: 90
Max TPM: 113.8
Min TPM: 62.5
M2_1
113.8
M2_2
108.7
M2_3
107.8
M2_4
104.2
M2_5
103.8
M2_6
103.7
M2_7
102.3
M2_8
102.2
M2_9
102.0
M2_10
101.9
M2_11
101.6
M2_12
101.5
M2_13
100.7
M2_14
100.4
M2_15
100.3
M2_16
99.0
M2_17
98.6
M2_18
97.8
M2_19
97.2
M2_20
97.2
M2_21
96.9
M2_22
96.8
M2_23
96.6
M2_24
96.5
M2_25
96.5
M2_26
96.3
M2_27
95.2
M2_28
94.8
M2_29
94.3
M2_30
93.5
M2_31
93.4
M2_32
93.4
M2_33
92.9
M2_34
92.8
M2_35
92.7
M2_36
92.7
M2_37
91.8
M2_38
91.6
M2_39
91.4
M2_40
90.9
M2_41
90.8
M2_42
90.6
M2_43
90.4
M2_44
90.3
M2_45
89.6
M2_46
89.0
M2_47
88.3
M2_48
88.0
M2_49
87.5
M2_50
86.6
M2_51
86.6
M2_52
86.3
M2_53
85.7
M2_54
85.5
M2_55
85.5
M2_56
85.1
M2_57
84.9
M2_58
84.5
M2_59
84.4
M2_60
84.3
M2_61
84.3
M2_62
84.1
M2_63
83.8
M2_64
83.2
M2_65
83.1
M2_66
83.1
M2_67
82.9
M2_68
82.7
M2_69
82.5
M2_70
81.9
M2_71
81.5
M2_72
81.4
M2_73
80.7
M2_74
80.5
M2_75
80.1
M2_76
78.3
M2_77
77.9
M2_78
77.7
M2_79
76.6
M2_80
76.6
M2_81
75.0
M2_82
73.7
M2_83
72.4
M2_84
70.8
M2_85
69.5
M2_86
68.0
M2_87
67.2
M2_88
66.4
M2_89
65.1
M2_90
62.5
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