A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
85.6
nTPM
Monaco:
331.5
nTPM
Schmiedel:
246.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.6
HPA sample
nTPM
Memory B-cell nTPM: 76.8
Samples: 6
Max nTPM: 110.0
Min nTPM: 49.1
P10809_1017
58.6
P10809_1025
110.0
P10809_1044
81.0
P10809_1063
79.3
P10809_1092
82.8
P10809_1105
49.1
Naive B-cell nTPM: 85.6
Samples: 6
Max nTPM: 139.8
Min nTPM: 25.8
P10809_1011
55.3
P10809_1029
97.8
P10809_1048
139.8
P10809_1067
25.8
P10809_1091
105.3
P10809_1104
89.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
331.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 331.5
Samples: 4
Max nTPM: 585.5
Min nTPM: 204.7
RHH5310_R3677
204.7
RHH5218_R3590
305.3
RHH5247_R3619
230.4
RHH5276_R3648
585.5
Naive B-cell nTPM: 270.8
Samples: 4
Max nTPM: 406.2
Min nTPM: 160.8
RHH5308_R3675
296.2
RHH5216_R3588
160.8
RHH5245_R3617
219.9
RHH5274_R3646
406.2
Non-switched memory B-cell nTPM: 307.8
Samples: 4
Max nTPM: 456.6
Min nTPM: 227.9
RHH5309_R3676
308.1
RHH5217_R3589
227.9
RHH5246_R3618
238.4
RHH5275_R3647
456.6
Plasmablast nTPM: 162.4
Samples: 4
Max nTPM: 201.5
Min nTPM: 108.7
RHH5312_R3679
108.7
RHH5220_R3592
173.7
RHH5249_R3621
201.5
RHH5278_R3650
165.5
Switched memory B-cell nTPM: 263.3
Samples: 4
Max nTPM: 453.0
Min nTPM: 131.1
RHH5311_R3678
131.1
RHH5219_R3591
307.8
RHH5248_R3620
161.3
RHH5277_R3649
453.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
246.0
Schmiedel sample id
TPM
Naive B-cell TPM: 246.0
Samples: 91
Max TPM: 391.1
Min TPM: 111.2
B_CELL_NAIVE_1
391.1
B_CELL_NAIVE_2
373.1
B_CELL_NAIVE_3
362.7
B_CELL_NAIVE_4
348.6
B_CELL_NAIVE_5
341.4
B_CELL_NAIVE_6
340.9
B_CELL_NAIVE_7
340.8
B_CELL_NAIVE_8
335.1
B_CELL_NAIVE_9
326.0
B_CELL_NAIVE_10
322.2
B_CELL_NAIVE_11
319.3
B_CELL_NAIVE_12
317.1
B_CELL_NAIVE_13
312.8
B_CELL_NAIVE_14
305.8
B_CELL_NAIVE_15
296.9
B_CELL_NAIVE_16
296.8
B_CELL_NAIVE_17
291.2
B_CELL_NAIVE_18
289.6
B_CELL_NAIVE_19
288.7
B_CELL_NAIVE_20
287.1
B_CELL_NAIVE_21
286.9
B_CELL_NAIVE_22
285.6
B_CELL_NAIVE_23
281.2
B_CELL_NAIVE_24
279.2
B_CELL_NAIVE_25
276.6
B_CELL_NAIVE_26
274.1
B_CELL_NAIVE_27
269.5
B_CELL_NAIVE_28
268.7
B_CELL_NAIVE_29
268.2
B_CELL_NAIVE_30
263.0
B_CELL_NAIVE_31
262.3
B_CELL_NAIVE_32
261.2
B_CELL_NAIVE_33
259.3
B_CELL_NAIVE_34
257.8
B_CELL_NAIVE_35
256.7
B_CELL_NAIVE_36
256.3
B_CELL_NAIVE_37
256.1
B_CELL_NAIVE_38
255.0
B_CELL_NAIVE_39
253.9
B_CELL_NAIVE_40
253.1
B_CELL_NAIVE_41
252.5
B_CELL_NAIVE_42
251.9
B_CELL_NAIVE_43
251.7
B_CELL_NAIVE_44
249.2
B_CELL_NAIVE_45
247.9
B_CELL_NAIVE_46
246.6
B_CELL_NAIVE_47
245.5
B_CELL_NAIVE_48
244.4
B_CELL_NAIVE_49
243.9
B_CELL_NAIVE_50
243.1
B_CELL_NAIVE_51
241.6
B_CELL_NAIVE_52
241.1
B_CELL_NAIVE_53
239.3
B_CELL_NAIVE_54
235.8
B_CELL_NAIVE_55
235.6
B_CELL_NAIVE_56
234.5
B_CELL_NAIVE_57
231.4
B_CELL_NAIVE_58
230.4
B_CELL_NAIVE_59
228.9
B_CELL_NAIVE_60
228.6
B_CELL_NAIVE_61
228.3
B_CELL_NAIVE_62
227.6
B_CELL_NAIVE_63
221.5
B_CELL_NAIVE_64
219.9
B_CELL_NAIVE_65
218.3
B_CELL_NAIVE_66
217.4
B_CELL_NAIVE_67
216.6
B_CELL_NAIVE_68
215.6
B_CELL_NAIVE_69
209.2
B_CELL_NAIVE_70
205.9
B_CELL_NAIVE_71
205.6
B_CELL_NAIVE_72
198.0
B_CELL_NAIVE_73
193.9
B_CELL_NAIVE_74
193.6
B_CELL_NAIVE_75
193.4
B_CELL_NAIVE_76
189.9
B_CELL_NAIVE_77
189.0
B_CELL_NAIVE_78
186.5
B_CELL_NAIVE_79
184.8
B_CELL_NAIVE_80
184.8
B_CELL_NAIVE_81
180.6
B_CELL_NAIVE_82
179.6
B_CELL_NAIVE_83
176.8
B_CELL_NAIVE_84
157.8
B_CELL_NAIVE_85
156.9
B_CELL_NAIVE_86
150.2
B_CELL_NAIVE_87
146.6
B_CELL_NAIVE_88
140.7
B_CELL_NAIVE_89
129.9
B_CELL_NAIVE_90
118.1
B_CELL_NAIVE_91
111.2
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