A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
33.6
nTPM
Schmiedel:
26.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
Classical monocyte nTPM: 3.6
Samples: 6
Max nTPM: 4.4
Min nTPM: 2.9
P10809_1003
4.4
P10809_1020
4.0
P10809_1039
3.7
P10809_1058
2.9
P10809_1080
3.1
P10809_1107
3.5
Intermediate monocyte nTPM: 6.3
Samples: 6
Max nTPM: 8.6
Min nTPM: 4.3
P10809_1004
5.9
P10809_1023
5.9
P10809_1042
7.1
P10809_1061
8.6
P10809_1081
4.3
P10809_1108
5.8
Non-classical monocyte nTPM: 5.3
Samples: 5
Max nTPM: 8.7
Min nTPM: 3.5
P10809_1005
5.7
P10809_1053
4.7
P10809_1072
8.7
P10809_1082
3.7
P10809_1109
3.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
Monaco sample
nTPM
Classical monocyte nTPM: 25.5
Samples: 4
Max nTPM: 32.3
Min nTPM: 16.3
RHH5313_R3680
22.9
RHH5221_R3593
32.3
RHH5250_R3622
30.6
RHH5279_R3651
16.3
Intermediate monocyte nTPM: 21.7
Samples: 4
Max nTPM: 29.2
Min nTPM: 15.2
RHH5314_R3681
26.3
RHH5222_R3594
29.2
RHH5251_R3623
16.0
RHH5280_R3652
15.2
Non-classical monocyte nTPM: 33.6
Samples: 4
Max nTPM: 40.8
Min nTPM: 26.8
RHH5315_R3682
38.1
RHH5223_R3595
40.8
RHH5252_R3624
26.8
RHH5281_R3653
28.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
Schmiedel sample id
TPM
Classical monocyte TPM: 13.2
Samples: 91
Max TPM: 21.1
Min TPM: 7.9
MONOCYTES_1
21.1
MONOCYTES_2
17.8
MONOCYTES_3
17.2
MONOCYTES_4
17.0
MONOCYTES_5
16.7
MONOCYTES_6
16.4
MONOCYTES_7
16.3
MONOCYTES_8
16.0
MONOCYTES_9
15.8
MONOCYTES_10
15.8
MONOCYTES_11
15.7
MONOCYTES_12
15.6
MONOCYTES_13
15.5
MONOCYTES_14
15.5
MONOCYTES_15
15.4
MONOCYTES_16
15.2
MONOCYTES_17
15.0
MONOCYTES_18
15.0
MONOCYTES_19
14.9
MONOCYTES_20
14.8
MONOCYTES_21
14.8
MONOCYTES_22
14.7
MONOCYTES_23
14.7
MONOCYTES_24
14.6
MONOCYTES_25
14.6
MONOCYTES_26
14.5
MONOCYTES_27
14.4
MONOCYTES_28
14.4
MONOCYTES_29
14.1
MONOCYTES_30
14.1
MONOCYTES_31
14.1
MONOCYTES_32
14.0
MONOCYTES_33
14.0
MONOCYTES_34
13.9
MONOCYTES_35
13.9
MONOCYTES_36
13.8
MONOCYTES_37
13.8
MONOCYTES_38
13.7
MONOCYTES_39
13.7
MONOCYTES_40
13.7
MONOCYTES_41
13.7
MONOCYTES_42
13.5
MONOCYTES_43
13.5
MONOCYTES_44
13.3
MONOCYTES_45
13.3
MONOCYTES_46
13.2
MONOCYTES_47
13.1
MONOCYTES_48
13.0
MONOCYTES_49
13.0
MONOCYTES_50
13.0
MONOCYTES_51
12.8
MONOCYTES_52
12.6
MONOCYTES_53
12.5
MONOCYTES_54
12.5
MONOCYTES_55
12.4
MONOCYTES_56
12.3
MONOCYTES_57
12.3
MONOCYTES_58
12.3
MONOCYTES_59
12.1
MONOCYTES_60
12.1
MONOCYTES_61
12.1
MONOCYTES_62
12.0
MONOCYTES_63
12.0
MONOCYTES_64
12.0
MONOCYTES_65
11.9
MONOCYTES_66
11.9
MONOCYTES_67
11.8
MONOCYTES_68
11.7
MONOCYTES_69
11.6
MONOCYTES_70
11.5
MONOCYTES_71
11.4
MONOCYTES_72
11.3
MONOCYTES_73
11.3
MONOCYTES_74
11.2
MONOCYTES_75
11.2
MONOCYTES_76
11.2
MONOCYTES_77
11.2
MONOCYTES_78
11.0
MONOCYTES_79
10.8
MONOCYTES_80
10.8
MONOCYTES_81
10.6
MONOCYTES_82
10.6
MONOCYTES_83
10.5
MONOCYTES_84
10.2
MONOCYTES_85
10.1
MONOCYTES_86
10.1
MONOCYTES_87
10.1
MONOCYTES_88
10.1
MONOCYTES_89
10.0
MONOCYTES_90
9.9
MONOCYTES_91
7.9
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Non-classical monocyte TPM: 26.5
Samples: 90
Max TPM: 41.1
Min TPM: 17.9
M2_1
41.1
M2_2
39.3
M2_3
38.4
M2_4
37.7
M2_5
34.3
M2_6
33.2
M2_7
33.0
M2_8
32.8
M2_9
32.8
M2_10
32.3
M2_11
32.2
M2_12
32.1
M2_13
31.6
M2_14
31.3
M2_15
31.0
M2_16
31.0
M2_17
31.0
M2_18
30.7
M2_19
30.4
M2_20
30.4
M2_21
30.3
M2_22
30.1
M2_23
29.8
M2_24
29.7
M2_25
29.6
M2_26
29.0
M2_27
29.0
M2_28
28.9
M2_29
28.4
M2_30
28.2
M2_31
28.2
M2_32
28.0
M2_33
27.5
M2_34
27.4
M2_35
27.2
M2_36
27.1
M2_37
27.1
M2_38
27.0
M2_39
26.9
M2_40
26.8
M2_41
26.7
M2_42
26.7
M2_43
26.4
M2_44
26.3
M2_45
26.2
M2_46
26.1
M2_47
26.0
M2_48
25.9
M2_49
25.8
M2_50
25.7
M2_51
25.2
M2_52
25.0
M2_53
24.9
M2_54
24.8
M2_55
24.8
M2_56
24.7
M2_57
24.5
M2_58
24.5
M2_59
24.5
M2_60
24.5
M2_61
24.1
M2_62
23.6
M2_63
23.5
M2_64
23.2
M2_65
23.2
M2_66
23.2
M2_67
22.9
M2_68
22.7
M2_69
22.7
M2_70
22.5
M2_71
22.4
M2_72
22.3
M2_73
22.2
M2_74
22.1
M2_75
22.1
M2_76
21.9
M2_77
21.7
M2_78
21.6
M2_79
21.6
M2_80
21.1
M2_81
21.0
M2_82
21.0
M2_83
20.4
M2_84
19.9
M2_85
19.6
M2_86
18.7
M2_87
18.6
M2_88
18.6
M2_89
18.4
M2_90
17.9
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