A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.7
nTPM
Monaco:
26.4
nTPM
Schmiedel:
29.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.7
HPA sample
nTPM
NK-cell nTPM: 8.7
Samples: 6
Max nTPM: 21.9
Min nTPM: 3.0
P10809_1013
7.8
P10809_1033
3.4
P10809_1052
3.0
P10809_1071
8.3
P10809_1093
21.9
P10809_1103
7.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Monaco sample
nTPM
NK-cell nTPM: 26.4
Samples: 4
Max nTPM: 38.9
Min nTPM: 19.7
RHH5316_R3683
19.7
RHH5224_R3596
38.9
RHH5253_R3625
23.1
RHH5282_R3654
23.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.4
Schmiedel sample id
TPM
NK-cell TPM: 29.4
Samples: 90
Max TPM: 47.4
Min TPM: 16.6
NK_1
47.4
NK_2
45.0
NK_3
43.8
NK_4
43.4
NK_5
42.1
NK_6
41.6
NK_7
40.8
NK_8
40.6
NK_9
39.0
NK_10
38.9
NK_11
37.3
NK_12
37.1
NK_13
37.0
NK_14
36.6
NK_15
36.4
NK_16
36.3
NK_17
35.5
NK_18
35.0
NK_19
34.7
NK_20
34.6
NK_21
34.5
NK_22
34.1
NK_23
33.5
NK_24
33.5
NK_25
33.3
NK_26
33.1
NK_27
32.8
NK_28
32.7
NK_29
32.7
NK_30
32.5
NK_31
32.2
NK_32
31.6
NK_33
31.4
NK_34
31.1
NK_35
31.0
NK_36
30.7
NK_37
30.5
NK_38
30.5
NK_39
30.5
NK_40
30.3
NK_41
30.3
NK_42
30.1
NK_43
29.9
NK_44
29.9
NK_45
29.8
NK_46
29.5
NK_47
29.5
NK_48
29.4
NK_49
29.4
NK_50
29.3
NK_51
29.2
NK_52
28.6
NK_53
28.6
NK_54
28.2
NK_55
27.9
NK_56
27.7
NK_57
27.7
NK_58
27.2
NK_59
26.6
NK_60
26.6
NK_61
25.9
NK_62
25.6
NK_63
25.5
NK_64
24.7
NK_65
24.4
NK_66
24.4
NK_67
24.3
NK_68
24.2
NK_69
24.0
NK_70
24.0
NK_71
22.9
NK_72
22.6
NK_73
22.4
NK_74
22.4
NK_75
21.5
NK_76
21.3
NK_77
21.0
NK_78
20.6
NK_79
20.3
NK_80
20.2
NK_81
20.2
NK_82
20.2
NK_83
19.8
NK_84
19.5
NK_85
18.9
NK_86
18.6
NK_87
18.5
NK_88
17.4
NK_89
16.6
NK_90
16.6
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