A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.7
nTPM
Monaco:
23.8
nTPM
Schmiedel:
22.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
HPA sample
nTPM
Classical monocyte nTPM: 4.7
Samples: 6
Max nTPM: 5.3
Min nTPM: 4.1
P10809_1003
4.5
P10809_1020
5.3
P10809_1039
4.1
P10809_1058
5.0
P10809_1080
4.9
P10809_1107
4.6
Intermediate monocyte nTPM: 6.7
Samples: 6
Max nTPM: 11.4
Min nTPM: 3.1
P10809_1004
3.5
P10809_1023
11.4
P10809_1042
6.5
P10809_1061
10.6
P10809_1081
4.9
P10809_1108
3.1
Non-classical monocyte nTPM: 3.9
Samples: 5
Max nTPM: 5.8
Min nTPM: 0.0
P10809_1005
5.8
P10809_1053
5.3
P10809_1072
0.0
P10809_1082
4.4
P10809_1109
3.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
Monaco sample
nTPM
Classical monocyte nTPM: 20.7
Samples: 4
Max nTPM: 28.0
Min nTPM: 15.4
RHH5313_R3680
19.3
RHH5221_R3593
28.0
RHH5250_R3622
20.1
RHH5279_R3651
15.4
Intermediate monocyte nTPM: 21.2
Samples: 4
Max nTPM: 25.0
Min nTPM: 19.2
RHH5314_R3681
19.4
RHH5222_R3594
21.2
RHH5251_R3623
19.2
RHH5280_R3652
25.0
Non-classical monocyte nTPM: 23.8
Samples: 4
Max nTPM: 28.2
Min nTPM: 18.6
RHH5315_R3682
18.6
RHH5223_R3595
25.1
RHH5252_R3624
28.2
RHH5281_R3653
23.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
Schmiedel sample id
TPM
Classical monocyte TPM: 18.7
Samples: 91
Max TPM: 24.7
Min TPM: 14.0
MONOCYTES_1
24.7
MONOCYTES_2
24.4
MONOCYTES_3
24.4
MONOCYTES_4
22.8
MONOCYTES_5
22.8
MONOCYTES_6
22.7
MONOCYTES_7
22.2
MONOCYTES_8
22.2
MONOCYTES_9
22.0
MONOCYTES_10
21.9
MONOCYTES_11
21.8
MONOCYTES_12
21.4
MONOCYTES_13
21.1
MONOCYTES_14
20.8
MONOCYTES_15
20.6
MONOCYTES_16
20.6
MONOCYTES_17
20.5
MONOCYTES_18
20.5
MONOCYTES_19
20.5
MONOCYTES_20
20.5
MONOCYTES_21
20.2
MONOCYTES_22
20.1
MONOCYTES_23
20.1
MONOCYTES_24
20.0
MONOCYTES_25
20.0
MONOCYTES_26
19.9
MONOCYTES_27
19.8
MONOCYTES_28
19.8
MONOCYTES_29
19.8
MONOCYTES_30
19.6
MONOCYTES_31
19.6
MONOCYTES_32
19.5
MONOCYTES_33
19.4
MONOCYTES_34
19.3
MONOCYTES_35
19.2
MONOCYTES_36
19.1
MONOCYTES_37
19.0
MONOCYTES_38
19.0
MONOCYTES_39
19.0
MONOCYTES_40
18.9
MONOCYTES_41
18.9
MONOCYTES_42
18.9
MONOCYTES_43
18.8
MONOCYTES_44
18.8
MONOCYTES_45
18.7
MONOCYTES_46
18.6
MONOCYTES_47
18.6
MONOCYTES_48
18.4
MONOCYTES_49
18.4
MONOCYTES_50
18.3
MONOCYTES_51
18.3
MONOCYTES_52
18.2
MONOCYTES_53
18.2
MONOCYTES_54
18.0
MONOCYTES_55
18.0
MONOCYTES_56
17.9
MONOCYTES_57
17.9
MONOCYTES_58
17.7
MONOCYTES_59
17.6
MONOCYTES_60
17.3
MONOCYTES_61
17.3
MONOCYTES_62
17.3
MONOCYTES_63
17.3
MONOCYTES_64
17.2
MONOCYTES_65
17.1
MONOCYTES_66
17.1
MONOCYTES_67
17.0
MONOCYTES_68
17.0
MONOCYTES_69
16.9
MONOCYTES_70
16.9
MONOCYTES_71
16.8
MONOCYTES_72
16.8
MONOCYTES_73
16.8
MONOCYTES_74
16.7
MONOCYTES_75
16.7
MONOCYTES_76
16.5
MONOCYTES_77
16.3
MONOCYTES_78
16.3
MONOCYTES_79
16.3
MONOCYTES_80
16.1
MONOCYTES_81
16.1
MONOCYTES_82
16.1
MONOCYTES_83
16.1
MONOCYTES_84
15.8
MONOCYTES_85
15.6
MONOCYTES_86
15.6
MONOCYTES_87
15.5
MONOCYTES_88
15.3
MONOCYTES_89
15.0
MONOCYTES_90
14.7
MONOCYTES_91
14.0
Show allShow less
Non-classical monocyte TPM: 22.6
Samples: 90
Max TPM: 30.9
Min TPM: 15.9
M2_1
30.9
M2_2
30.0
M2_3
29.2
M2_4
28.8
M2_5
28.4
M2_6
28.4
M2_7
27.8
M2_8
27.6
M2_9
27.4
M2_10
27.3
M2_11
27.1
M2_12
26.9
M2_13
26.8
M2_14
26.6
M2_15
26.6
M2_16
26.3
M2_17
26.1
M2_18
25.9
M2_19
25.6
M2_20
25.5
M2_21
25.1
M2_22
24.9
M2_23
24.8
M2_24
24.8
M2_25
24.7
M2_26
24.6
M2_27
24.6
M2_28
24.3
M2_29
24.3
M2_30
24.3
M2_31
24.1
M2_32
24.1
M2_33
24.0
M2_34
23.9
M2_35
23.9
M2_36
23.8
M2_37
23.7
M2_38
23.7
M2_39
23.5
M2_40
23.2
M2_41
22.9
M2_42
22.8
M2_43
22.7
M2_44
22.7
M2_45
22.7
M2_46
22.6
M2_47
22.5
M2_48
22.4
M2_49
22.4
M2_50
22.2
M2_51
22.1
M2_52
21.7
M2_53
21.5
M2_54
21.4
M2_55
21.3
M2_56
21.0
M2_57
20.9
M2_58
20.9
M2_59
20.9
M2_60
20.9
M2_61
20.8
M2_62
20.4
M2_63
20.3
M2_64
20.0
M2_65
20.0
M2_66
20.0
M2_67
19.9
M2_68
19.8
M2_69
19.7
M2_70
19.6
M2_71
19.5
M2_72
19.4
M2_73
19.2
M2_74
19.1
M2_75
19.1
M2_76
19.1
M2_77
19.0
M2_78
18.9
M2_79
18.9
M2_80
18.5
M2_81
18.3
M2_82
18.3
M2_83
18.2
M2_84
17.9
M2_85
17.6
M2_86
17.6
M2_87
17.5
M2_88
17.0
M2_89
16.9
M2_90
15.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
