A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
34.7
nTPM
Schmiedel:
25.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
Classical monocyte nTPM: 9.6
Samples: 6
Max nTPM: 13.7
Min nTPM: 7.4
P10809_1003
8.7
P10809_1020
13.7
P10809_1039
9.8
P10809_1058
8.6
P10809_1080
7.4
P10809_1107
9.5
Intermediate monocyte nTPM: 8.0
Samples: 6
Max nTPM: 8.9
Min nTPM: 6.7
P10809_1004
8.0
P10809_1023
8.9
P10809_1042
8.4
P10809_1061
6.7
P10809_1081
7.1
P10809_1108
8.8
Non-classical monocyte nTPM: 5.4
Samples: 5
Max nTPM: 7.5
Min nTPM: 2.2
P10809_1005
5.7
P10809_1053
5.4
P10809_1072
2.2
P10809_1082
6.3
P10809_1109
7.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.7
Monaco sample
nTPM
Classical monocyte nTPM: 29.0
Samples: 4
Max nTPM: 36.5
Min nTPM: 20.3
RHH5313_R3680
36.5
RHH5221_R3593
20.3
RHH5250_R3622
34.4
RHH5279_R3651
24.9
Intermediate monocyte nTPM: 32.8
Samples: 4
Max nTPM: 41.3
Min nTPM: 22.4
RHH5314_R3681
41.3
RHH5222_R3594
22.4
RHH5251_R3623
34.9
RHH5280_R3652
32.6
Non-classical monocyte nTPM: 34.7
Samples: 4
Max nTPM: 40.7
Min nTPM: 31.7
RHH5315_R3682
31.7
RHH5223_R3595
40.7
RHH5252_R3624
32.5
RHH5281_R3653
33.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.6
Schmiedel sample id
TPM
Classical monocyte TPM: 22.2
Samples: 91
Max TPM: 36.6
Min TPM: 10.9
MONOCYTES_1
36.6
MONOCYTES_2
33.1
MONOCYTES_3
30.1
MONOCYTES_4
29.9
MONOCYTES_5
29.5
MONOCYTES_6
29.3
MONOCYTES_7
28.9
MONOCYTES_8
28.7
MONOCYTES_9
28.2
MONOCYTES_10
28.2
MONOCYTES_11
28.2
MONOCYTES_12
27.9
MONOCYTES_13
27.9
MONOCYTES_14
27.8
MONOCYTES_15
27.6
MONOCYTES_16
27.5
MONOCYTES_17
27.3
MONOCYTES_18
27.0
MONOCYTES_19
26.9
MONOCYTES_20
26.9
MONOCYTES_21
26.2
MONOCYTES_22
26.1
MONOCYTES_23
26.0
MONOCYTES_24
25.8
MONOCYTES_25
25.8
MONOCYTES_26
25.7
MONOCYTES_27
25.5
MONOCYTES_28
25.1
MONOCYTES_29
25.0
MONOCYTES_30
24.9
MONOCYTES_31
24.9
MONOCYTES_32
24.6
MONOCYTES_33
24.5
MONOCYTES_34
24.3
MONOCYTES_35
24.0
MONOCYTES_36
23.9
MONOCYTES_37
23.9
MONOCYTES_38
23.9
MONOCYTES_39
23.6
MONOCYTES_40
23.5
MONOCYTES_41
23.3
MONOCYTES_42
23.1
MONOCYTES_43
22.7
MONOCYTES_44
22.7
MONOCYTES_45
22.7
MONOCYTES_46
22.7
MONOCYTES_47
22.4
MONOCYTES_48
22.2
MONOCYTES_49
22.0
MONOCYTES_50
22.0
MONOCYTES_51
22.0
MONOCYTES_52
21.9
MONOCYTES_53
21.9
MONOCYTES_54
21.7
MONOCYTES_55
21.3
MONOCYTES_56
21.2
MONOCYTES_57
21.1
MONOCYTES_58
20.4
MONOCYTES_59
20.2
MONOCYTES_60
20.1
MONOCYTES_61
20.0
MONOCYTES_62
19.8
MONOCYTES_63
19.2
MONOCYTES_64
19.1
MONOCYTES_65
18.7
MONOCYTES_66
18.6
MONOCYTES_67
18.3
MONOCYTES_68
17.9
MONOCYTES_69
17.6
MONOCYTES_70
17.6
MONOCYTES_71
17.5
MONOCYTES_72
17.3
MONOCYTES_73
17.1
MONOCYTES_74
17.1
MONOCYTES_75
17.0
MONOCYTES_76
16.8
MONOCYTES_77
16.3
MONOCYTES_78
16.2
MONOCYTES_79
16.1
MONOCYTES_80
15.6
MONOCYTES_81
15.5
MONOCYTES_82
15.4
MONOCYTES_83
15.3
MONOCYTES_84
14.5
MONOCYTES_85
14.4
MONOCYTES_86
14.1
MONOCYTES_87
14.0
MONOCYTES_88
13.9
MONOCYTES_89
13.5
MONOCYTES_90
12.3
MONOCYTES_91
10.9
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Non-classical monocyte TPM: 25.6
Samples: 90
Max TPM: 50.2
Min TPM: 13.7
M2_1
50.2
M2_2
40.5
M2_3
36.8
M2_4
36.2
M2_5
36.1
M2_6
35.6
M2_7
34.9
M2_8
34.8
M2_9
34.4
M2_10
34.0
M2_11
33.7
M2_12
33.7
M2_13
31.3
M2_14
30.5
M2_15
30.2
M2_16
30.2
M2_17
30.0
M2_18
29.9
M2_19
29.9
M2_20
29.9
M2_21
29.8
M2_22
29.6
M2_23
29.6
M2_24
29.3
M2_25
29.2
M2_26
28.9
M2_27
28.8
M2_28
28.8
M2_29
28.5
M2_30
28.5
M2_31
27.6
M2_32
27.4
M2_33
27.1
M2_34
27.0
M2_35
27.0
M2_36
26.8
M2_37
26.8
M2_38
26.7
M2_39
26.6
M2_40
26.5
M2_41
26.1
M2_42
26.1
M2_43
25.5
M2_44
24.9
M2_45
24.8
M2_46
24.5
M2_47
24.2
M2_48
24.1
M2_49
24.0
M2_50
23.7
M2_51
23.7
M2_52
23.6
M2_53
23.5
M2_54
23.2
M2_55
23.1
M2_56
23.0
M2_57
23.0
M2_58
22.5
M2_59
22.3
M2_60
22.2
M2_61
22.2
M2_62
22.1
M2_63
22.1
M2_64
22.0
M2_65
22.0
M2_66
21.9
M2_67
21.7
M2_68
21.6
M2_69
21.5
M2_70
21.4
M2_71
21.2
M2_72
21.2
M2_73
20.8
M2_74
20.7
M2_75
20.5
M2_76
20.3
M2_77
19.8
M2_78
19.3
M2_79
19.2
M2_80
18.8
M2_81
17.9
M2_82
17.6
M2_83
17.0
M2_84
16.8
M2_85
16.7
M2_86
15.9
M2_87
15.2
M2_88
14.2
M2_89
14.2
M2_90
13.7
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