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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPS5
EVOLUTIONARY VAGINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1264.2 nTPM
GTEx:1264.2 nTPM
FANTOM5:1114.9 Scaled Tags Per Million
Macaque:377.6 nTPM
Mouse:2800.0 nTPM
Rat:1287.6 nTPM

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055878Antibody HPA061979
Squamous epithelial cells HighMedium



VAGINA - PROTEINTALKS DB MS
Median intensity 43194
Sample Intensity
Vagina_01
43194

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1264.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1264.2
Samples: 170

Max nTPM: 2978.0
Min nTPM: 609.5
Std nTPM: 401.5
Median nTPM: 1193.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2978.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2827.8
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 2647.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2606.0
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2506.0
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2225.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2176.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1970.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1970.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1959.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1931.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1906.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1905.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1893.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1849.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1807.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1761.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1699.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1695.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1691.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1689.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1653.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1607.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1589.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1578.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1575.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1560.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1558.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1530.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1530.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1521.8
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1509.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1508.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1496.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1495.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1492.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1487.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1468.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1453.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1451.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1440.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1421.9
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1415.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1411.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1409.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1395.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1393.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1390.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1389.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1385.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1382.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1380.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1376.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1364.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1353.4
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1348.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1347.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1341.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1340.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1331.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1328.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1322.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1320.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1315.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1287.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1277.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1268.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1267.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1263.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1231.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1224.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1224.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1224.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1223.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1217.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1215.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1213.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1210.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1208.0
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1206.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1204.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1203.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1202.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1202.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1195.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1190.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1186.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1185.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1181.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1177.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1175.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1174.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1169.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1162.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1160.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1155.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1155.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1148.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1147.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1137.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1130.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1126.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1121.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1118.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1118.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1111.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1106.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1104.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1103.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1093.2
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1071.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1070.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1062.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1055.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1055.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1052.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1040.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1035.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1033.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1025.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1018.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1010.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1001.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 999.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 992.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 992.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 991.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 985.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 984.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 983.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 980.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 979.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 975.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 963.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 962.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 959.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 955.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 955.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 951.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 943.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 941.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 941.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 937.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 931.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 925.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 913.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 904.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 901.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 892.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 879.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 861.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 856.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 855.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 848.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 838.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 838.0
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 818.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 814.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 805.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 805.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 792.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 790.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 767.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 761.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 734.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 730.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 704.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 687.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 642.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 609.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1114.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1114.9
FF:10204-103F6 68 years, female 1114.9

VAGINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.6
Macaque sample Sample description nTPM
Vagina
nTPM: 377.6
Samples: 1

Max nTPM: 377.6
Min nTPM: 377.6
Sample A 377.6

VAGINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2800.0
Mouse sample Sample description nTPM
Vagina
nTPM: 2800.1
Samples: 2

Max nTPM: 3320.9
Min nTPM: 2279.2
Sample A 3320.9
Sample B 2279.2

VAGINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1287.6
Rat sample Sample description nTPM
Vagina
nTPM: 1287.6
Samples: 2

Max nTPM: 1315.1
Min nTPM: 1260.1
Sample A 1260.1
Sample A 1315.1

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