A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.2
nTPM
Monaco:
24.5
nTPM
Schmiedel:
81.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
HPA sample
nTPM
Classical monocyte nTPM: 20.4
Samples: 6
Max nTPM: 34.7
Min nTPM: 7.7
P10809_1003
7.7
P10809_1020
14.6
P10809_1039
18.5
P10809_1058
34.7
P10809_1080
25.6
P10809_1107
21.3
Intermediate monocyte nTPM: 12.8
Samples: 6
Max nTPM: 24.2
Min nTPM: 3.6
P10809_1004
9.7
P10809_1023
7.7
P10809_1042
3.6
P10809_1061
18.5
P10809_1081
24.2
P10809_1108
13.0
Non-classical monocyte nTPM: 27.2
Samples: 5
Max nTPM: 67.8
Min nTPM: 9.8
P10809_1005
9.8
P10809_1053
12.9
P10809_1072
67.8
P10809_1082
28.5
P10809_1109
17.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.5
Monaco sample
nTPM
Classical monocyte nTPM: 24.5
Samples: 4
Max nTPM: 30.3
Min nTPM: 18.3
RHH5313_R3680
18.3
RHH5221_R3593
24.4
RHH5250_R3622
30.3
RHH5279_R3651
25.1
Intermediate monocyte nTPM: 17.3
Samples: 4
Max nTPM: 24.5
Min nTPM: 10.7
RHH5314_R3681
10.7
RHH5222_R3594
12.2
RHH5251_R3623
21.8
RHH5280_R3652
24.5
Non-classical monocyte nTPM: 21.6
Samples: 4
Max nTPM: 26.9
Min nTPM: 14.9
RHH5315_R3682
20.0
RHH5223_R3595
14.9
RHH5252_R3624
24.7
RHH5281_R3653
26.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.7
Schmiedel sample id
TPM
Classical monocyte TPM: 81.7
Samples: 91
Max TPM: 114.0
Min TPM: 51.3
MONOCYTES_1
114.0
MONOCYTES_2
113.5
MONOCYTES_3
111.1
MONOCYTES_4
107.9
MONOCYTES_5
105.6
MONOCYTES_6
103.9
MONOCYTES_7
102.2
MONOCYTES_8
101.4
MONOCYTES_9
98.3
MONOCYTES_10
97.9
MONOCYTES_11
95.9
MONOCYTES_12
95.9
MONOCYTES_13
95.4
MONOCYTES_14
93.9
MONOCYTES_15
93.4
MONOCYTES_16
92.0
MONOCYTES_17
92.0
MONOCYTES_18
91.9
MONOCYTES_19
91.9
MONOCYTES_20
91.8
MONOCYTES_21
91.0
MONOCYTES_22
90.6
MONOCYTES_23
90.1
MONOCYTES_24
89.9
MONOCYTES_25
89.7
MONOCYTES_26
89.5
MONOCYTES_27
89.1
MONOCYTES_28
88.4
MONOCYTES_29
88.2
MONOCYTES_30
87.3
MONOCYTES_31
86.4
MONOCYTES_32
85.9
MONOCYTES_33
85.6
MONOCYTES_34
85.2
MONOCYTES_35
85.2
MONOCYTES_36
85.2
MONOCYTES_37
85.0
MONOCYTES_38
84.8
MONOCYTES_39
84.4
MONOCYTES_40
84.1
MONOCYTES_41
84.0
MONOCYTES_42
83.9
MONOCYTES_43
82.9
MONOCYTES_44
82.5
MONOCYTES_45
82.3
MONOCYTES_46
80.3
MONOCYTES_47
79.8
MONOCYTES_48
79.7
MONOCYTES_49
78.7
MONOCYTES_50
78.6
MONOCYTES_51
78.5
MONOCYTES_52
78.2
MONOCYTES_53
77.9
MONOCYTES_54
77.2
MONOCYTES_55
76.5
MONOCYTES_56
76.5
MONOCYTES_57
76.3
MONOCYTES_58
75.6
MONOCYTES_59
75.6
MONOCYTES_60
75.6
MONOCYTES_61
75.6
MONOCYTES_62
75.3
MONOCYTES_63
75.3
MONOCYTES_64
75.1
MONOCYTES_65
74.9
MONOCYTES_66
74.2
MONOCYTES_67
73.4
MONOCYTES_68
73.2
MONOCYTES_69
73.0
MONOCYTES_70
72.5
MONOCYTES_71
71.8
MONOCYTES_72
70.9
MONOCYTES_73
70.2
MONOCYTES_74
70.0
MONOCYTES_75
69.9
MONOCYTES_76
69.0
MONOCYTES_77
68.5
MONOCYTES_78
67.9
MONOCYTES_79
67.7
MONOCYTES_80
67.6
MONOCYTES_81
67.5
MONOCYTES_82
67.1
MONOCYTES_83
67.0
MONOCYTES_84
64.3
MONOCYTES_85
62.6
MONOCYTES_86
62.2
MONOCYTES_87
61.6
MONOCYTES_88
60.9
MONOCYTES_89
60.6
MONOCYTES_90
58.7
MONOCYTES_91
51.3
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Non-classical monocyte TPM: 79.6
Samples: 90
Max TPM: 118.9
Min TPM: 54.9
M2_1
118.9
M2_2
115.7
M2_3
108.4
M2_4
106.7
M2_5
106.5
M2_6
105.5
M2_7
98.1
M2_8
98.0
M2_9
97.8
M2_10
97.4
M2_11
95.7
M2_12
95.7
M2_13
95.0
M2_14
94.8
M2_15
94.7
M2_16
93.6
M2_17
93.0
M2_18
92.4
M2_19
92.4
M2_20
92.4
M2_21
91.6
M2_22
90.9
M2_23
90.7
M2_24
90.7
M2_25
89.4
M2_26
89.2
M2_27
89.1
M2_28
88.9
M2_29
88.1
M2_30
85.8
M2_31
85.7
M2_32
85.7
M2_33
84.8
M2_34
84.1
M2_35
84.0
M2_36
83.6
M2_37
83.3
M2_38
82.7
M2_39
82.1
M2_40
81.7
M2_41
81.5
M2_42
80.4
M2_43
80.3
M2_44
79.9
M2_45
78.8
M2_46
78.1
M2_47
77.9
M2_48
77.5
M2_49
77.0
M2_50
75.8
M2_51
74.5
M2_52
74.5
M2_53
74.2
M2_54
72.9
M2_55
72.9
M2_56
72.7
M2_57
72.6
M2_58
72.3
M2_59
72.3
M2_60
71.9
M2_61
71.7
M2_62
71.3
M2_63
70.9
M2_64
70.2
M2_65
70.0
M2_66
70.0
M2_67
68.7
M2_68
68.6
M2_69
68.3
M2_70
68.1
M2_71
67.1
M2_72
67.0
M2_73
66.0
M2_74
65.1
M2_75
64.4
M2_76
63.4
M2_77
63.3
M2_78
62.0
M2_79
61.6
M2_80
60.9
M2_81
60.8
M2_82
60.6
M2_83
60.1
M2_84
60.1
M2_85
58.3
M2_86
58.1
M2_87
57.2
M2_88
57.1
M2_89
57.1
M2_90
54.9
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