A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.1
nTPM
Monaco:
58.9
nTPM
Schmiedel:
45.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.1
HPA sample
nTPM
Classical monocyte nTPM: 15.1
Samples: 6
Max nTPM: 22.3
Min nTPM: 7.3
P10809_1003
10.5
P10809_1020
15.8
P10809_1039
22.3
P10809_1058
7.3
P10809_1080
19.8
P10809_1107
15.1
Intermediate monocyte nTPM: 5.7
Samples: 6
Max nTPM: 10.9
Min nTPM: 0.0
P10809_1004
7.8
P10809_1023
10.9
P10809_1042
6.5
P10809_1061
0.0
P10809_1081
5.8
P10809_1108
3.2
Non-classical monocyte nTPM: 13.6
Samples: 5
Max nTPM: 26.8
Min nTPM: 5.5
P10809_1005
5.5
P10809_1053
26.8
P10809_1072
12.3
P10809_1082
13.0
P10809_1109
10.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.9
Monaco sample
nTPM
Classical monocyte nTPM: 58.9
Samples: 4
Max nTPM: 82.9
Min nTPM: 44.3
RHH5313_R3680
82.9
RHH5221_R3593
56.6
RHH5250_R3622
44.3
RHH5279_R3651
51.9
Intermediate monocyte nTPM: 29.5
Samples: 4
Max nTPM: 32.8
Min nTPM: 25.0
RHH5314_R3681
27.8
RHH5222_R3594
32.2
RHH5251_R3623
25.0
RHH5280_R3652
32.8
Non-classical monocyte nTPM: 57.9
Samples: 4
Max nTPM: 67.9
Min nTPM: 46.3
RHH5315_R3682
60.8
RHH5223_R3595
56.6
RHH5252_R3624
46.3
RHH5281_R3653
67.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Schmiedel sample id
TPM
Classical monocyte TPM: 33.3
Samples: 91
Max TPM: 63.5
Min TPM: 15.7
MONOCYTES_1
63.5
MONOCYTES_2
47.6
MONOCYTES_3
47.1
MONOCYTES_4
46.8
MONOCYTES_5
46.6
MONOCYTES_6
45.0
MONOCYTES_7
44.4
MONOCYTES_8
44.2
MONOCYTES_9
44.1
MONOCYTES_10
44.0
MONOCYTES_11
42.8
MONOCYTES_12
42.1
MONOCYTES_13
41.8
MONOCYTES_14
41.2
MONOCYTES_15
41.0
MONOCYTES_16
40.3
MONOCYTES_17
39.8
MONOCYTES_18
39.6
MONOCYTES_19
38.7
MONOCYTES_20
38.7
MONOCYTES_21
38.5
MONOCYTES_22
38.5
MONOCYTES_23
38.4
MONOCYTES_24
38.1
MONOCYTES_25
38.1
MONOCYTES_26
37.7
MONOCYTES_27
37.4
MONOCYTES_28
37.2
MONOCYTES_29
37.1
MONOCYTES_30
36.9
MONOCYTES_31
35.7
MONOCYTES_32
35.7
MONOCYTES_33
35.3
MONOCYTES_34
34.9
MONOCYTES_35
34.9
MONOCYTES_36
34.5
MONOCYTES_37
34.5
MONOCYTES_38
34.3
MONOCYTES_39
34.1
MONOCYTES_40
34.0
MONOCYTES_41
33.6
MONOCYTES_42
33.5
MONOCYTES_43
33.5
MONOCYTES_44
33.5
MONOCYTES_45
33.5
MONOCYTES_46
33.3
MONOCYTES_47
33.3
MONOCYTES_48
33.1
MONOCYTES_49
32.8
MONOCYTES_50
32.3
MONOCYTES_51
31.7
MONOCYTES_52
31.6
MONOCYTES_53
31.2
MONOCYTES_54
31.1
MONOCYTES_55
30.6
MONOCYTES_56
30.6
MONOCYTES_57
30.5
MONOCYTES_58
30.5
MONOCYTES_59
30.5
MONOCYTES_60
30.0
MONOCYTES_61
29.9
MONOCYTES_62
29.8
MONOCYTES_63
29.7
MONOCYTES_64
29.3
MONOCYTES_65
28.9
MONOCYTES_66
28.7
MONOCYTES_67
28.7
MONOCYTES_68
28.7
MONOCYTES_69
28.6
MONOCYTES_70
28.3
MONOCYTES_71
28.2
MONOCYTES_72
27.6
MONOCYTES_73
27.4
MONOCYTES_74
27.3
MONOCYTES_75
26.9
MONOCYTES_76
26.7
MONOCYTES_77
26.6
MONOCYTES_78
25.9
MONOCYTES_79
25.8
MONOCYTES_80
24.3
MONOCYTES_81
24.2
MONOCYTES_82
24.1
MONOCYTES_83
24.1
MONOCYTES_84
23.8
MONOCYTES_85
22.6
MONOCYTES_86
20.6
MONOCYTES_87
20.4
MONOCYTES_88
20.2
MONOCYTES_89
17.5
MONOCYTES_90
16.9
MONOCYTES_91
15.7
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Non-classical monocyte TPM: 45.7
Samples: 90
Max TPM: 84.9
Min TPM: 10.0
M2_1
84.9
M2_2
83.6
M2_3
77.3
M2_4
75.8
M2_5
72.6
M2_6
65.8
M2_7
65.1
M2_8
64.8
M2_9
64.2
M2_10
62.1
M2_11
62.1
M2_12
61.7
M2_13
61.4
M2_14
58.1
M2_15
57.9
M2_16
57.0
M2_17
55.8
M2_18
55.8
M2_19
55.7
M2_20
55.4
M2_21
54.7
M2_22
54.1
M2_23
53.8
M2_24
53.7
M2_25
53.7
M2_26
51.9
M2_27
51.9
M2_28
51.5
M2_29
51.4
M2_30
51.1
M2_31
51.0
M2_32
50.2
M2_33
49.2
M2_34
49.0
M2_35
48.9
M2_36
48.7
M2_37
48.6
M2_38
48.5
M2_39
48.5
M2_40
48.4
M2_41
48.2
M2_42
47.9
M2_43
47.5
M2_44
47.5
M2_45
46.9
M2_46
46.7
M2_47
46.6
M2_48
46.4
M2_49
46.4
M2_50
46.2
M2_51
45.9
M2_52
45.7
M2_53
45.4
M2_54
44.6
M2_55
43.1
M2_56
42.9
M2_57
42.5
M2_58
42.5
M2_59
42.3
M2_60
42.1
M2_61
41.2
M2_62
39.8
M2_63
39.4
M2_64
37.4
M2_65
36.1
M2_66
36.1
M2_67
35.7
M2_68
35.5
M2_69
35.4
M2_70
35.0
M2_71
34.5
M2_72
34.4
M2_73
34.2
M2_74
33.0
M2_75
32.9
M2_76
32.3
M2_77
31.3
M2_78
29.5
M2_79
29.5
M2_80
28.7
M2_81
28.3
M2_82
27.6
M2_83
27.3
M2_84
23.2
M2_85
21.0
M2_86
19.1
M2_87
16.6
M2_88
14.2
M2_89
14.2
M2_90
10.0
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