A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
17.3
nTPM
Schmiedel:
36.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.6
P10809_1003
1.0
P10809_1020
0.8
P10809_1039
0.6
P10809_1058
1.2
P10809_1080
0.8
P10809_1107
1.0
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.8
P10809_1004
1.4
P10809_1023
0.8
P10809_1042
1.3
P10809_1061
1.5
P10809_1081
1.8
P10809_1108
2.1
Non-classical monocyte nTPM: 1.2
Samples: 5
Max nTPM: 2.0
Min nTPM: 0.1
P10809_1005
2.0
P10809_1053
1.1
P10809_1072
0.1
P10809_1082
1.3
P10809_1109
1.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.3
Monaco sample
nTPM
Classical monocyte nTPM: 11.0
Samples: 4
Max nTPM: 11.9
Min nTPM: 9.5
RHH5313_R3680
11.9
RHH5221_R3593
9.5
RHH5250_R3622
10.9
RHH5279_R3651
11.8
Intermediate monocyte nTPM: 14.5
Samples: 4
Max nTPM: 16.5
Min nTPM: 12.0
RHH5314_R3681
12.0
RHH5222_R3594
15.9
RHH5251_R3623
16.5
RHH5280_R3652
13.4
Non-classical monocyte nTPM: 17.3
Samples: 4
Max nTPM: 19.4
Min nTPM: 15.7
RHH5315_R3682
16.2
RHH5223_R3595
17.9
RHH5252_R3624
15.7
RHH5281_R3653
19.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
Schmiedel sample id
TPM
Classical monocyte TPM: 25.9
Samples: 91
Max TPM: 36.2
Min TPM: 14.9
MONOCYTES_1
36.2
MONOCYTES_2
35.1
MONOCYTES_3
34.9
MONOCYTES_4
34.0
MONOCYTES_5
33.8
MONOCYTES_6
33.6
MONOCYTES_7
31.5
MONOCYTES_8
30.5
MONOCYTES_9
30.4
MONOCYTES_10
29.9
MONOCYTES_11
29.9
MONOCYTES_12
29.5
MONOCYTES_13
29.3
MONOCYTES_14
29.2
MONOCYTES_15
29.0
MONOCYTES_16
28.9
MONOCYTES_17
28.8
MONOCYTES_18
28.7
MONOCYTES_19
28.7
MONOCYTES_20
28.3
MONOCYTES_21
28.2
MONOCYTES_22
28.1
MONOCYTES_23
27.8
MONOCYTES_24
27.4
MONOCYTES_25
27.3
MONOCYTES_26
27.2
MONOCYTES_27
27.1
MONOCYTES_28
27.0
MONOCYTES_29
27.0
MONOCYTES_30
26.8
MONOCYTES_31
26.7
MONOCYTES_32
26.7
MONOCYTES_33
26.7
MONOCYTES_34
26.7
MONOCYTES_35
26.5
MONOCYTES_36
26.4
MONOCYTES_37
26.4
MONOCYTES_38
26.4
MONOCYTES_39
26.3
MONOCYTES_40
26.3
MONOCYTES_41
26.2
MONOCYTES_42
26.0
MONOCYTES_43
25.9
MONOCYTES_44
25.7
MONOCYTES_45
25.5
MONOCYTES_46
25.4
MONOCYTES_47
25.3
MONOCYTES_48
25.3
MONOCYTES_49
25.3
MONOCYTES_50
25.2
MONOCYTES_51
25.2
MONOCYTES_52
25.1
MONOCYTES_53
25.1
MONOCYTES_54
25.0
MONOCYTES_55
24.8
MONOCYTES_56
24.6
MONOCYTES_57
24.6
MONOCYTES_58
24.6
MONOCYTES_59
24.6
MONOCYTES_60
24.5
MONOCYTES_61
24.3
MONOCYTES_62
24.3
MONOCYTES_63
24.1
MONOCYTES_64
24.0
MONOCYTES_65
24.0
MONOCYTES_66
23.7
MONOCYTES_67
23.7
MONOCYTES_68
23.7
MONOCYTES_69
23.4
MONOCYTES_70
23.3
MONOCYTES_71
22.9
MONOCYTES_72
22.9
MONOCYTES_73
22.8
MONOCYTES_74
22.8
MONOCYTES_75
22.7
MONOCYTES_76
22.5
MONOCYTES_77
22.5
MONOCYTES_78
22.4
MONOCYTES_79
22.4
MONOCYTES_80
22.3
MONOCYTES_81
22.3
MONOCYTES_82
22.1
MONOCYTES_83
22.0
MONOCYTES_84
21.9
MONOCYTES_85
21.8
MONOCYTES_86
21.7
MONOCYTES_87
21.4
MONOCYTES_88
21.0
MONOCYTES_89
21.0
MONOCYTES_90
20.5
MONOCYTES_91
14.9
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Non-classical monocyte TPM: 36.8
Samples: 90
Max TPM: 47.0
Min TPM: 25.7
M2_1
47.0
M2_2
46.8
M2_3
45.8
M2_4
45.0
M2_5
44.8
M2_6
44.6
M2_7
44.2
M2_8
44.0
M2_9
43.6
M2_10
43.4
M2_11
43.3
M2_12
43.0
M2_13
42.2
M2_14
42.1
M2_15
41.6
M2_16
41.4
M2_17
41.4
M2_18
41.4
M2_19
40.8
M2_20
40.7
M2_21
40.4
M2_22
40.2
M2_23
40.2
M2_24
40.1
M2_25
40.0
M2_26
39.7
M2_27
39.5
M2_28
39.5
M2_29
39.4
M2_30
39.3
M2_31
38.9
M2_32
38.7
M2_33
38.7
M2_34
38.3
M2_35
38.2
M2_36
38.2
M2_37
37.6
M2_38
37.5
M2_39
37.3
M2_40
37.0
M2_41
36.8
M2_42
36.6
M2_43
36.4
M2_44
36.3
M2_45
36.2
M2_46
36.1
M2_47
36.1
M2_48
35.8
M2_49
35.8
M2_50
35.7
M2_51
35.7
M2_52
35.7
M2_53
35.6
M2_54
35.5
M2_55
35.5
M2_56
35.4
M2_57
35.4
M2_58
35.3
M2_59
35.3
M2_60
35.2
M2_61
35.2
M2_62
34.7
M2_63
34.6
M2_64
34.6
M2_65
34.4
M2_66
34.1
M2_67
33.9
M2_68
33.9
M2_69
33.9
M2_70
33.7
M2_71
33.4
M2_72
33.1
M2_73
32.6
M2_74
32.6
M2_75
32.5
M2_76
32.4
M2_77
32.1
M2_78
31.9
M2_79
31.9
M2_80
31.7
M2_81
31.0
M2_82
29.7
M2_83
29.2
M2_84
28.5
M2_85
27.9
M2_86
27.9
M2_87
27.4
M2_88
27.3
M2_89
26.5
M2_90
25.7
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