A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1694.0
nTPM
Monaco:
1600.9
nTPM
Schmiedel:
2355.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1694.0
HPA sample
nTPM
Classical monocyte nTPM: 1694.0
Samples: 6
Max nTPM: 2274.4
Min nTPM: 1186.9
P10809_1003
2274.4
P10809_1020
1731.2
P10809_1039
1919.1
P10809_1058
1293.1
P10809_1080
1186.9
P10809_1107
1759.2
Intermediate monocyte nTPM: 1189.2
Samples: 6
Max nTPM: 1578.7
Min nTPM: 731.9
P10809_1004
731.9
P10809_1023
1141.3
P10809_1042
1476.1
P10809_1061
1349.7
P10809_1081
857.7
P10809_1108
1578.7
Non-classical monocyte nTPM: 582.2
Samples: 5
Max nTPM: 973.7
Min nTPM: 278.2
P10809_1005
311.4
P10809_1053
546.9
P10809_1072
800.8
P10809_1082
278.2
P10809_1109
973.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1600.9
Monaco sample
nTPM
Classical monocyte nTPM: 1601.0
Samples: 4
Max nTPM: 1795.3
Min nTPM: 1244.3
RHH5313_R3680
1570.1
RHH5221_R3593
1244.3
RHH5250_R3622
1794.1
RHH5279_R3651
1795.3
Intermediate monocyte nTPM: 1054.2
Samples: 4
Max nTPM: 1437.7
Min nTPM: 732.2
RHH5314_R3681
1437.7
RHH5222_R3594
778.0
RHH5251_R3623
732.2
RHH5280_R3652
1268.9
Non-classical monocyte nTPM: 391.9
Samples: 4
Max nTPM: 525.2
Min nTPM: 200.5
RHH5315_R3682
525.2
RHH5223_R3595
200.5
RHH5252_R3624
365.0
RHH5281_R3653
477.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2355.3
Schmiedel sample id
TPM
Classical monocyte TPM: 2355.3
Samples: 91
Max TPM: 3719.0
Min TPM: 1411.6
MONOCYTES_1
3719.0
MONOCYTES_2
3481.3
MONOCYTES_3
3220.7
MONOCYTES_4
3208.9
MONOCYTES_5
3134.9
MONOCYTES_6
3114.3
MONOCYTES_7
2983.9
MONOCYTES_8
2970.2
MONOCYTES_9
2966.6
MONOCYTES_10
2950.7
MONOCYTES_11
2948.6
MONOCYTES_12
2904.7
MONOCYTES_13
2902.4
MONOCYTES_14
2894.1
MONOCYTES_15
2850.8
MONOCYTES_16
2801.4
MONOCYTES_17
2769.3
MONOCYTES_18
2742.8
MONOCYTES_19
2732.7
MONOCYTES_20
2697.0
MONOCYTES_21
2688.9
MONOCYTES_22
2632.5
MONOCYTES_23
2627.1
MONOCYTES_24
2610.1
MONOCYTES_25
2589.0
MONOCYTES_26
2587.2
MONOCYTES_27
2568.8
MONOCYTES_28
2534.8
MONOCYTES_29
2520.4
MONOCYTES_30
2482.2
MONOCYTES_31
2476.6
MONOCYTES_32
2471.3
MONOCYTES_33
2465.6
MONOCYTES_34
2457.2
MONOCYTES_35
2447.8
MONOCYTES_36
2446.6
MONOCYTES_37
2427.6
MONOCYTES_38
2419.0
MONOCYTES_39
2402.8
MONOCYTES_40
2402.3
MONOCYTES_41
2400.8
MONOCYTES_42
2368.0
MONOCYTES_43
2334.3
MONOCYTES_44
2311.5
MONOCYTES_45
2302.0
MONOCYTES_46
2266.6
MONOCYTES_47
2255.7
MONOCYTES_48
2249.9
MONOCYTES_49
2248.3
MONOCYTES_50
2245.4
MONOCYTES_51
2237.7
MONOCYTES_52
2222.0
MONOCYTES_53
2221.2
MONOCYTES_54
2205.6
MONOCYTES_55
2185.6
MONOCYTES_56
2178.5
MONOCYTES_57
2141.6
MONOCYTES_58
2127.1
MONOCYTES_59
2120.3
MONOCYTES_60
2116.9
MONOCYTES_61
2113.4
MONOCYTES_62
2106.1
MONOCYTES_63
2097.7
MONOCYTES_64
2081.9
MONOCYTES_65
2071.6
MONOCYTES_66
2063.2
MONOCYTES_67
2059.6
MONOCYTES_68
2056.5
MONOCYTES_69
2043.0
MONOCYTES_70
2042.9
MONOCYTES_71
2026.6
MONOCYTES_72
1994.3
MONOCYTES_73
1967.0
MONOCYTES_74
1951.2
MONOCYTES_75
1939.1
MONOCYTES_76
1932.1
MONOCYTES_77
1923.5
MONOCYTES_78
1894.0
MONOCYTES_79
1888.0
MONOCYTES_80
1877.8
MONOCYTES_81
1877.4
MONOCYTES_82
1849.8
MONOCYTES_83
1828.5
MONOCYTES_84
1820.9
MONOCYTES_85
1813.6
MONOCYTES_86
1787.0
MONOCYTES_87
1769.1
MONOCYTES_88
1755.3
MONOCYTES_89
1694.6
MONOCYTES_90
1605.9
MONOCYTES_91
1411.6
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Non-classical monocyte TPM: 638.0
Samples: 90
Max TPM: 1706.1
Min TPM: 204.0
M2_1
1706.1
M2_2
1580.4
M2_3
1248.7
M2_4
1159.0
M2_5
1091.5
M2_6
1082.7
M2_7
1076.7
M2_8
1039.7
M2_9
1009.4
M2_10
957.1
M2_11
942.8
M2_12
908.6
M2_13
881.4
M2_14
846.2
M2_15
829.0
M2_16
824.3
M2_17
824.1
M2_18
810.6
M2_19
805.3
M2_20
799.2
M2_21
775.6
M2_22
772.4
M2_23
768.2
M2_24
745.7
M2_25
740.4
M2_26
738.8
M2_27
728.6
M2_28
724.0
M2_29
710.3
M2_30
702.6
M2_31
702.3
M2_32
700.4
M2_33
693.9
M2_34
693.9
M2_35
687.6
M2_36
680.0
M2_37
665.9
M2_38
660.5
M2_39
658.3
M2_40
656.1
M2_41
654.0
M2_42
651.0
M2_43
646.2
M2_44
645.6
M2_45
642.3
M2_46
630.9
M2_47
625.6
M2_48
620.2
M2_49
610.8
M2_50
607.5
M2_51
603.4
M2_52
603.2
M2_53
577.4
M2_54
571.3
M2_55
554.1
M2_56
553.5
M2_57
544.3
M2_58
538.9
M2_59
525.7
M2_60
522.4
M2_61
493.7
M2_62
484.5
M2_63
479.6
M2_64
479.5
M2_65
475.1
M2_66
472.5
M2_67
441.4
M2_68
427.0
M2_69
426.8
M2_70
423.4
M2_71
398.5
M2_72
381.0
M2_73
379.9
M2_74
370.6
M2_75
368.4
M2_76
365.2
M2_77
362.9
M2_78
344.2
M2_79
335.0
M2_80
317.3
M2_81
314.9
M2_82
301.8
M2_83
283.1
M2_84
277.3
M2_85
274.1
M2_86
273.2
M2_87
269.8
M2_88
230.5
M2_89
212.1
M2_90
204.0
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