A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
104.1
nTPM
Monaco:
38.8
nTPM
Schmiedel:
33.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.1
HPA sample
nTPM
Classical monocyte nTPM: 104.1
Samples: 6
Max nTPM: 126.5
Min nTPM: 74.0
P10809_1003
74.0
P10809_1020
103.0
P10809_1039
118.4
P10809_1058
126.5
P10809_1080
89.8
P10809_1107
113.1
Intermediate monocyte nTPM: 64.9
Samples: 6
Max nTPM: 105.6
Min nTPM: 31.5
P10809_1004
31.5
P10809_1023
53.2
P10809_1042
49.2
P10809_1061
105.6
P10809_1081
58.4
P10809_1108
91.5
Non-classical monocyte nTPM: 22.3
Samples: 5
Max nTPM: 31.2
Min nTPM: 13.1
P10809_1005
24.3
P10809_1053
22.5
P10809_1072
20.6
P10809_1082
13.1
P10809_1109
31.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.8
Monaco sample
nTPM
Classical monocyte nTPM: 38.8
Samples: 4
Max nTPM: 49.7
Min nTPM: 26.7
RHH5313_R3680
45.1
RHH5221_R3593
33.6
RHH5250_R3622
49.7
RHH5279_R3651
26.7
Intermediate monocyte nTPM: 23.8
Samples: 4
Max nTPM: 31.4
Min nTPM: 13.4
RHH5314_R3681
31.4
RHH5222_R3594
30.7
RHH5251_R3623
19.5
RHH5280_R3652
13.4
Non-classical monocyte nTPM: 10.0
Samples: 4
Max nTPM: 16.7
Min nTPM: 4.4
RHH5315_R3682
8.3
RHH5223_R3595
10.5
RHH5252_R3624
16.7
RHH5281_R3653
4.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.1
Schmiedel sample id
TPM
Classical monocyte TPM: 33.1
Samples: 91
Max TPM: 49.1
Min TPM: 21.7
MONOCYTES_1
49.1
MONOCYTES_2
47.8
MONOCYTES_3
47.8
MONOCYTES_4
45.0
MONOCYTES_5
44.5
MONOCYTES_6
42.5
MONOCYTES_7
41.5
MONOCYTES_8
41.3
MONOCYTES_9
41.3
MONOCYTES_10
41.2
MONOCYTES_11
40.3
MONOCYTES_12
39.7
MONOCYTES_13
38.9
MONOCYTES_14
38.4
MONOCYTES_15
38.4
MONOCYTES_16
38.3
MONOCYTES_17
37.8
MONOCYTES_18
37.6
MONOCYTES_19
37.5
MONOCYTES_20
36.8
MONOCYTES_21
36.1
MONOCYTES_22
35.7
MONOCYTES_23
35.6
MONOCYTES_24
35.5
MONOCYTES_25
35.3
MONOCYTES_26
35.1
MONOCYTES_27
35.0
MONOCYTES_28
34.5
MONOCYTES_29
34.5
MONOCYTES_30
34.5
MONOCYTES_31
34.0
MONOCYTES_32
33.9
MONOCYTES_33
33.7
MONOCYTES_34
33.4
MONOCYTES_35
33.2
MONOCYTES_36
33.1
MONOCYTES_37
32.8
MONOCYTES_38
32.6
MONOCYTES_39
32.6
MONOCYTES_40
32.5
MONOCYTES_41
32.5
MONOCYTES_42
32.4
MONOCYTES_43
32.2
MONOCYTES_44
32.2
MONOCYTES_45
32.1
MONOCYTES_46
32.1
MONOCYTES_47
32.1
MONOCYTES_48
32.1
MONOCYTES_49
31.8
MONOCYTES_50
31.8
MONOCYTES_51
31.6
MONOCYTES_52
31.5
MONOCYTES_53
31.5
MONOCYTES_54
31.2
MONOCYTES_55
31.1
MONOCYTES_56
31.1
MONOCYTES_57
31.1
MONOCYTES_58
31.0
MONOCYTES_59
30.9
MONOCYTES_60
30.8
MONOCYTES_61
30.8
MONOCYTES_62
30.4
MONOCYTES_63
30.4
MONOCYTES_64
30.3
MONOCYTES_65
30.0
MONOCYTES_66
29.9
MONOCYTES_67
29.9
MONOCYTES_68
29.9
MONOCYTES_69
29.8
MONOCYTES_70
29.5
MONOCYTES_71
29.4
MONOCYTES_72
29.2
MONOCYTES_73
29.1
MONOCYTES_74
28.8
MONOCYTES_75
28.5
MONOCYTES_76
28.4
MONOCYTES_77
28.4
MONOCYTES_78
28.2
MONOCYTES_79
27.9
MONOCYTES_80
27.7
MONOCYTES_81
27.5
MONOCYTES_82
27.4
MONOCYTES_83
27.3
MONOCYTES_84
26.9
MONOCYTES_85
26.7
MONOCYTES_86
26.3
MONOCYTES_87
25.8
MONOCYTES_88
25.1
MONOCYTES_89
22.6
MONOCYTES_90
22.0
MONOCYTES_91
21.7
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Non-classical monocyte TPM: 7.7
Samples: 90
Max TPM: 19.8
Min TPM: 2.6
M2_1
19.8
M2_2
16.5
M2_3
15.2
M2_4
12.7
M2_5
12.2
M2_6
12.0
M2_7
11.8
M2_8
11.6
M2_9
11.5
M2_10
11.4
M2_11
11.3
M2_12
11.0
M2_13
10.9
M2_14
10.9
M2_15
10.6
M2_16
10.3
M2_17
9.7
M2_18
9.6
M2_19
9.4
M2_20
9.3
M2_21
9.2
M2_22
9.1
M2_23
9.0
M2_24
8.8
M2_25
8.8
M2_26
8.8
M2_27
8.7
M2_28
8.7
M2_29
8.6
M2_30
8.6
M2_31
8.6
M2_32
8.5
M2_33
8.4
M2_34
8.3
M2_35
8.1
M2_36
8.1
M2_37
8.1
M2_38
8.1
M2_39
7.8
M2_40
7.7
M2_41
7.6
M2_42
7.5
M2_43
7.5
M2_44
7.5
M2_45
7.4
M2_46
7.3
M2_47
7.2
M2_48
7.0
M2_49
7.0
M2_50
7.0
M2_51
7.0
M2_52
7.0
M2_53
6.9
M2_54
6.9
M2_55
6.9
M2_56
6.8
M2_57
6.7
M2_58
6.6
M2_59
6.4
M2_60
6.3
M2_61
6.2
M2_62
6.1
M2_63
6.1
M2_64
5.8
M2_65
5.8
M2_66
5.7
M2_67
5.7
M2_68
5.6
M2_69
5.5
M2_70
5.3
M2_71
5.2
M2_72
5.2
M2_73
5.1
M2_74
5.1
M2_75
5.0
M2_76
5.0
M2_77
4.7
M2_78
4.6
M2_79
4.6
M2_80
4.6
M2_81
4.4
M2_82
4.4
M2_83
4.3
M2_84
4.1
M2_85
4.0
M2_86
3.8
M2_87
3.8
M2_88
3.3
M2_89
3.2
M2_90
2.6
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