A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.1
nTPM
Monaco:
30.1
nTPM
Schmiedel:
32.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.1
HPA sample
nTPM
Classical monocyte nTPM: 5.3
Samples: 6
Max nTPM: 9.5
Min nTPM: 2.4
P10809_1003
2.4
P10809_1020
9.5
P10809_1039
7.5
P10809_1058
2.7
P10809_1080
4.4
P10809_1107
5.4
Intermediate monocyte nTPM: 9.1
Samples: 6
Max nTPM: 12.2
Min nTPM: 5.0
P10809_1004
6.5
P10809_1023
12.2
P10809_1042
5.0
P10809_1061
8.8
P10809_1081
11.0
P10809_1108
11.3
Non-classical monocyte nTPM: 6.8
Samples: 5
Max nTPM: 11.5
Min nTPM: 4.8
P10809_1005
4.8
P10809_1053
6.9
P10809_1072
5.1
P10809_1082
5.8
P10809_1109
11.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.1
Monaco sample
nTPM
Classical monocyte nTPM: 21.6
Samples: 4
Max nTPM: 32.2
Min nTPM: 15.3
RHH5313_R3680
16.9
RHH5221_R3593
15.3
RHH5250_R3622
21.9
RHH5279_R3651
32.2
Intermediate monocyte nTPM: 30.1
Samples: 4
Max nTPM: 44.3
Min nTPM: 15.9
RHH5314_R3681
44.3
RHH5222_R3594
15.9
RHH5251_R3623
31.4
RHH5280_R3652
28.8
Non-classical monocyte nTPM: 29.9
Samples: 4
Max nTPM: 33.7
Min nTPM: 26.0
RHH5315_R3682
33.7
RHH5223_R3595
26.0
RHH5252_R3624
26.9
RHH5281_R3653
33.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.9
Schmiedel sample id
TPM
Classical monocyte TPM: 16.5
Samples: 91
Max TPM: 26.3
Min TPM: 10.3
MONOCYTES_1
26.3
MONOCYTES_2
22.9
MONOCYTES_3
22.7
MONOCYTES_4
22.1
MONOCYTES_5
22.0
MONOCYTES_6
21.4
MONOCYTES_7
21.4
MONOCYTES_8
21.1
MONOCYTES_9
21.0
MONOCYTES_10
20.9
MONOCYTES_11
20.8
MONOCYTES_12
20.7
MONOCYTES_13
20.3
MONOCYTES_14
19.6
MONOCYTES_15
19.4
MONOCYTES_16
19.3
MONOCYTES_17
19.2
MONOCYTES_18
19.2
MONOCYTES_19
18.8
MONOCYTES_20
18.7
MONOCYTES_21
18.6
MONOCYTES_22
18.3
MONOCYTES_23
18.3
MONOCYTES_24
18.2
MONOCYTES_25
18.1
MONOCYTES_26
18.1
MONOCYTES_27
18.0
MONOCYTES_28
18.0
MONOCYTES_29
17.9
MONOCYTES_30
17.9
MONOCYTES_31
17.8
MONOCYTES_32
17.7
MONOCYTES_33
17.6
MONOCYTES_34
17.5
MONOCYTES_35
17.5
MONOCYTES_36
17.5
MONOCYTES_37
17.3
MONOCYTES_38
16.6
MONOCYTES_39
16.5
MONOCYTES_40
16.4
MONOCYTES_41
16.4
MONOCYTES_42
16.3
MONOCYTES_43
16.2
MONOCYTES_44
16.1
MONOCYTES_45
16.1
MONOCYTES_46
16.1
MONOCYTES_47
16.1
MONOCYTES_48
16.1
MONOCYTES_49
15.9
MONOCYTES_50
15.9
MONOCYTES_51
15.8
MONOCYTES_52
15.8
MONOCYTES_53
15.8
MONOCYTES_54
15.7
MONOCYTES_55
15.6
MONOCYTES_56
15.3
MONOCYTES_57
15.2
MONOCYTES_58
15.1
MONOCYTES_59
15.1
MONOCYTES_60
14.9
MONOCYTES_61
14.9
MONOCYTES_62
14.7
MONOCYTES_63
14.7
MONOCYTES_64
14.6
MONOCYTES_65
14.6
MONOCYTES_66
14.3
MONOCYTES_67
14.3
MONOCYTES_68
14.2
MONOCYTES_69
14.1
MONOCYTES_70
14.0
MONOCYTES_71
14.0
MONOCYTES_72
13.9
MONOCYTES_73
13.9
MONOCYTES_74
13.8
MONOCYTES_75
13.8
MONOCYTES_76
13.7
MONOCYTES_77
13.4
MONOCYTES_78
13.3
MONOCYTES_79
13.3
MONOCYTES_80
13.3
MONOCYTES_81
13.1
MONOCYTES_82
12.9
MONOCYTES_83
12.8
MONOCYTES_84
12.8
MONOCYTES_85
12.6
MONOCYTES_86
12.1
MONOCYTES_87
11.6
MONOCYTES_88
11.6
MONOCYTES_89
11.3
MONOCYTES_90
10.4
MONOCYTES_91
10.3
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Non-classical monocyte TPM: 32.9
Samples: 90
Max TPM: 54.8
Min TPM: 18.3
M2_1
54.8
M2_2
51.4
M2_3
45.2
M2_4
44.3
M2_5
43.7
M2_6
43.1
M2_7
42.2
M2_8
41.6
M2_9
41.1
M2_10
41.1
M2_11
41.0
M2_12
40.9
M2_13
40.4
M2_14
39.1
M2_15
39.0
M2_16
38.3
M2_17
38.0
M2_18
37.5
M2_19
37.4
M2_20
37.3
M2_21
37.0
M2_22
36.9
M2_23
36.8
M2_24
36.6
M2_25
36.2
M2_26
35.9
M2_27
35.8
M2_28
35.4
M2_29
34.9
M2_30
34.8
M2_31
34.7
M2_32
34.3
M2_33
34.2
M2_34
34.1
M2_35
33.8
M2_36
33.4
M2_37
33.2
M2_38
33.0
M2_39
32.4
M2_40
32.3
M2_41
32.2
M2_42
32.1
M2_43
32.1
M2_44
31.8
M2_45
31.4
M2_46
31.3
M2_47
31.1
M2_48
30.9
M2_49
30.8
M2_50
30.7
M2_51
30.7
M2_52
30.6
M2_53
30.6
M2_54
30.6
M2_55
30.5
M2_56
30.2
M2_57
30.2
M2_58
30.2
M2_59
30.1
M2_60
29.8
M2_61
29.7
M2_62
29.7
M2_63
29.7
M2_64
29.5
M2_65
29.4
M2_66
29.1
M2_67
29.0
M2_68
28.9
M2_69
28.9
M2_70
28.9
M2_71
28.8
M2_72
28.7
M2_73
28.4
M2_74
28.2
M2_75
27.6
M2_76
27.5
M2_77
26.9
M2_78
26.8
M2_79
26.8
M2_80
26.4
M2_81
26.4
M2_82
25.6
M2_83
25.6
M2_84
25.5
M2_85
25.0
M2_86
24.5
M2_87
24.1
M2_88
23.9
M2_89
23.9
M2_90
18.3
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