A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
207.7
nTPM
Monaco:
205.6
nTPM
Schmiedel:
76.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
207.7
HPA sample
nTPM
Classical monocyte nTPM: 120.6
Samples: 6
Max nTPM: 156.0
Min nTPM: 89.9
P10809_1003
120.8
P10809_1020
139.6
P10809_1039
156.0
P10809_1058
89.9
P10809_1080
95.7
P10809_1107
121.8
Intermediate monocyte nTPM: 176.4
Samples: 6
Max nTPM: 211.2
Min nTPM: 126.4
P10809_1004
141.9
P10809_1023
211.2
P10809_1042
206.0
P10809_1061
176.9
P10809_1081
126.4
P10809_1108
196.2
Non-classical monocyte nTPM: 207.7
Samples: 5
Max nTPM: 322.8
Min nTPM: 132.8
P10809_1005
136.4
P10809_1053
239.3
P10809_1072
322.8
P10809_1082
132.8
P10809_1109
207.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
205.6
Monaco sample
nTPM
Classical monocyte nTPM: 201.8
Samples: 4
Max nTPM: 253.5
Min nTPM: 179.0
RHH5313_R3680
192.5
RHH5221_R3593
179.0
RHH5250_R3622
253.5
RHH5279_R3651
182.2
Intermediate monocyte nTPM: 205.6
Samples: 4
Max nTPM: 289.0
Min nTPM: 125.1
RHH5314_R3681
232.1
RHH5222_R3594
125.1
RHH5251_R3623
176.3
RHH5280_R3652
289.0
Non-classical monocyte nTPM: 191.9
Samples: 4
Max nTPM: 241.9
Min nTPM: 133.8
RHH5315_R3682
205.2
RHH5223_R3595
133.8
RHH5252_R3624
186.8
RHH5281_R3653
241.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.5
Schmiedel sample id
TPM
Classical monocyte TPM: 53.9
Samples: 91
Max TPM: 64.8
Min TPM: 42.1
MONOCYTES_1
64.8
MONOCYTES_2
64.0
MONOCYTES_3
62.8
MONOCYTES_4
61.9
MONOCYTES_5
61.5
MONOCYTES_6
61.2
MONOCYTES_7
60.8
MONOCYTES_8
60.5
MONOCYTES_9
59.6
MONOCYTES_10
59.5
MONOCYTES_11
58.8
MONOCYTES_12
58.8
MONOCYTES_13
58.7
MONOCYTES_14
58.7
MONOCYTES_15
58.6
MONOCYTES_16
58.3
MONOCYTES_17
58.2
MONOCYTES_18
57.9
MONOCYTES_19
57.6
MONOCYTES_20
57.4
MONOCYTES_21
57.3
MONOCYTES_22
57.2
MONOCYTES_23
57.1
MONOCYTES_24
57.1
MONOCYTES_25
57.0
MONOCYTES_26
56.2
MONOCYTES_27
56.1
MONOCYTES_28
56.1
MONOCYTES_29
56.1
MONOCYTES_30
56.0
MONOCYTES_31
56.0
MONOCYTES_32
55.8
MONOCYTES_33
55.7
MONOCYTES_34
55.7
MONOCYTES_35
55.7
MONOCYTES_36
55.7
MONOCYTES_37
55.5
MONOCYTES_38
55.5
MONOCYTES_39
55.2
MONOCYTES_40
55.1
MONOCYTES_41
54.9
MONOCYTES_42
54.6
MONOCYTES_43
54.6
MONOCYTES_44
54.5
MONOCYTES_45
54.4
MONOCYTES_46
54.4
MONOCYTES_47
54.4
MONOCYTES_48
54.4
MONOCYTES_49
54.3
MONOCYTES_50
54.3
MONOCYTES_51
54.2
MONOCYTES_52
54.2
MONOCYTES_53
54.1
MONOCYTES_54
53.8
MONOCYTES_55
53.5
MONOCYTES_56
53.5
MONOCYTES_57
53.0
MONOCYTES_58
52.9
MONOCYTES_59
52.6
MONOCYTES_60
52.5
MONOCYTES_61
52.4
MONOCYTES_62
51.8
MONOCYTES_63
51.6
MONOCYTES_64
51.6
MONOCYTES_65
51.6
MONOCYTES_66
51.3
MONOCYTES_67
51.1
MONOCYTES_68
51.0
MONOCYTES_69
50.6
MONOCYTES_70
50.4
MONOCYTES_71
50.2
MONOCYTES_72
49.9
MONOCYTES_73
49.8
MONOCYTES_74
49.7
MONOCYTES_75
49.2
MONOCYTES_76
49.0
MONOCYTES_77
49.0
MONOCYTES_78
49.0
MONOCYTES_79
48.6
MONOCYTES_80
48.5
MONOCYTES_81
48.5
MONOCYTES_82
47.6
MONOCYTES_83
46.0
MONOCYTES_84
45.9
MONOCYTES_85
45.5
MONOCYTES_86
45.3
MONOCYTES_87
45.2
MONOCYTES_88
44.7
MONOCYTES_89
44.2
MONOCYTES_90
43.4
MONOCYTES_91
42.1
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Non-classical monocyte TPM: 76.5
Samples: 90
Max TPM: 98.7
Min TPM: 60.4
M2_1
98.7
M2_2
93.9
M2_3
91.1
M2_4
87.1
M2_5
85.6
M2_6
85.4
M2_7
85.2
M2_8
85.1
M2_9
84.7
M2_10
84.6
M2_11
84.6
M2_12
83.1
M2_13
83.1
M2_14
82.9
M2_15
82.7
M2_16
82.7
M2_17
82.5
M2_18
82.4
M2_19
82.4
M2_20
82.4
M2_21
82.3
M2_22
82.3
M2_23
82.0
M2_24
81.4
M2_25
81.3
M2_26
81.3
M2_27
81.1
M2_28
80.3
M2_29
80.0
M2_30
79.7
M2_31
79.7
M2_32
79.7
M2_33
79.5
M2_34
79.2
M2_35
79.1
M2_36
78.9
M2_37
78.9
M2_38
78.4
M2_39
78.2
M2_40
77.9
M2_41
77.8
M2_42
77.3
M2_43
77.0
M2_44
76.8
M2_45
76.8
M2_46
76.4
M2_47
75.8
M2_48
75.8
M2_49
75.6
M2_50
75.5
M2_51
75.2
M2_52
75.0
M2_53
74.7
M2_54
74.6
M2_55
74.6
M2_56
74.0
M2_57
73.6
M2_58
73.5
M2_59
73.3
M2_60
73.3
M2_61
73.2
M2_62
73.0
M2_63
72.8
M2_64
72.7
M2_65
72.5
M2_66
72.4
M2_67
71.9
M2_68
71.9
M2_69
70.9
M2_70
70.9
M2_71
70.8
M2_72
70.6
M2_73
70.5
M2_74
70.0
M2_75
69.3
M2_76
69.2
M2_77
69.1
M2_78
68.5
M2_79
68.4
M2_80
67.9
M2_81
67.9
M2_82
67.8
M2_83
67.1
M2_84
66.9
M2_85
66.6
M2_86
66.6
M2_87
64.6
M2_88
63.8
M2_89
62.2
M2_90
60.4
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