A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.8
nTPM
Monaco:
65.9
nTPM
Schmiedel:
49.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.8
HPA sample
nTPM
Classical monocyte nTPM: 11.8
Samples: 6
Max nTPM: 16.6
Min nTPM: 9.2
P10809_1003
10.6
P10809_1020
10.8
P10809_1039
13.0
P10809_1058
16.6
P10809_1080
9.2
P10809_1107
10.5
Intermediate monocyte nTPM: 7.0
Samples: 6
Max nTPM: 10.5
Min nTPM: 4.5
P10809_1004
5.5
P10809_1023
4.5
P10809_1042
7.8
P10809_1061
10.5
P10809_1081
6.2
P10809_1108
7.2
Non-classical monocyte nTPM: 4.6
Samples: 5
Max nTPM: 7.3
Min nTPM: 0.6
P10809_1005
4.7
P10809_1053
3.3
P10809_1072
0.6
P10809_1082
6.9
P10809_1109
7.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.9
Monaco sample
nTPM
Classical monocyte nTPM: 65.9
Samples: 4
Max nTPM: 70.3
Min nTPM: 61.8
RHH5313_R3680
62.7
RHH5221_R3593
68.6
RHH5250_R3622
61.8
RHH5279_R3651
70.3
Intermediate monocyte nTPM: 31.1
Samples: 4
Max nTPM: 41.3
Min nTPM: 26.5
RHH5314_R3681
26.7
RHH5222_R3594
26.5
RHH5251_R3623
29.8
RHH5280_R3652
41.3
Non-classical monocyte nTPM: 27.5
Samples: 4
Max nTPM: 41.5
Min nTPM: 12.6
RHH5315_R3682
41.5
RHH5223_R3595
12.6
RHH5252_R3624
32.4
RHH5281_R3653
23.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.1
Schmiedel sample id
TPM
Classical monocyte TPM: 49.1
Samples: 91
Max TPM: 65.6
Min TPM: 39.1
MONOCYTES_1
65.6
MONOCYTES_2
62.6
MONOCYTES_3
62.6
MONOCYTES_4
61.7
MONOCYTES_5
59.2
MONOCYTES_6
58.4
MONOCYTES_7
57.9
MONOCYTES_8
56.5
MONOCYTES_9
56.1
MONOCYTES_10
56.0
MONOCYTES_11
55.5
MONOCYTES_12
55.5
MONOCYTES_13
55.4
MONOCYTES_14
54.4
MONOCYTES_15
54.3
MONOCYTES_16
54.3
MONOCYTES_17
53.7
MONOCYTES_18
53.6
MONOCYTES_19
53.4
MONOCYTES_20
53.2
MONOCYTES_21
53.0
MONOCYTES_22
52.7
MONOCYTES_23
52.6
MONOCYTES_24
52.4
MONOCYTES_25
51.6
MONOCYTES_26
51.6
MONOCYTES_27
51.6
MONOCYTES_28
51.3
MONOCYTES_29
51.3
MONOCYTES_30
51.1
MONOCYTES_31
51.0
MONOCYTES_32
50.7
MONOCYTES_33
50.6
MONOCYTES_34
50.5
MONOCYTES_35
50.5
MONOCYTES_36
50.2
MONOCYTES_37
50.2
MONOCYTES_38
49.8
MONOCYTES_39
49.8
MONOCYTES_40
49.6
MONOCYTES_41
49.6
MONOCYTES_42
49.4
MONOCYTES_43
49.1
MONOCYTES_44
49.1
MONOCYTES_45
49.0
MONOCYTES_46
49.0
MONOCYTES_47
48.8
MONOCYTES_48
48.6
MONOCYTES_49
48.5
MONOCYTES_50
48.2
MONOCYTES_51
47.6
MONOCYTES_52
47.5
MONOCYTES_53
47.3
MONOCYTES_54
47.2
MONOCYTES_55
47.2
MONOCYTES_56
47.1
MONOCYTES_57
46.9
MONOCYTES_58
46.7
MONOCYTES_59
46.4
MONOCYTES_60
46.3
MONOCYTES_61
46.3
MONOCYTES_62
46.3
MONOCYTES_63
46.0
MONOCYTES_64
45.7
MONOCYTES_65
45.5
MONOCYTES_66
45.1
MONOCYTES_67
45.1
MONOCYTES_68
44.9
MONOCYTES_69
44.7
MONOCYTES_70
44.6
MONOCYTES_71
44.6
MONOCYTES_72
44.2
MONOCYTES_73
44.1
MONOCYTES_74
44.0
MONOCYTES_75
43.5
MONOCYTES_76
43.4
MONOCYTES_77
43.3
MONOCYTES_78
43.2
MONOCYTES_79
42.9
MONOCYTES_80
42.9
MONOCYTES_81
42.9
MONOCYTES_82
42.7
MONOCYTES_83
42.5
MONOCYTES_84
42.3
MONOCYTES_85
42.2
MONOCYTES_86
42.0
MONOCYTES_87
41.8
MONOCYTES_88
41.5
MONOCYTES_89
41.5
MONOCYTES_90
40.0
MONOCYTES_91
39.1
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Non-classical monocyte TPM: 24.3
Samples: 90
Max TPM: 33.6
Min TPM: 18.0
M2_1
33.6
M2_2
30.2
M2_3
29.7
M2_4
29.5
M2_5
29.0
M2_6
29.0
M2_7
28.9
M2_8
28.9
M2_9
28.5
M2_10
28.2
M2_11
28.1
M2_12
28.0
M2_13
27.8
M2_14
27.6
M2_15
27.6
M2_16
27.5
M2_17
27.4
M2_18
27.2
M2_19
26.8
M2_20
26.1
M2_21
26.1
M2_22
26.1
M2_23
26.0
M2_24
25.8
M2_25
25.6
M2_26
25.5
M2_27
25.5
M2_28
25.4
M2_29
25.4
M2_30
25.3
M2_31
25.3
M2_32
25.2
M2_33
25.1
M2_34
25.1
M2_35
25.0
M2_36
24.8
M2_37
24.8
M2_38
24.6
M2_39
24.5
M2_40
24.5
M2_41
24.4
M2_42
24.3
M2_43
24.2
M2_44
24.0
M2_45
23.9
M2_46
23.9
M2_47
23.9
M2_48
23.8
M2_49
23.8
M2_50
23.8
M2_51
23.7
M2_52
23.6
M2_53
23.5
M2_54
23.5
M2_55
23.4
M2_56
23.2
M2_57
23.2
M2_58
23.1
M2_59
23.0
M2_60
22.9
M2_61
22.9
M2_62
22.9
M2_63
22.8
M2_64
22.8
M2_65
22.8
M2_66
22.5
M2_67
22.5
M2_68
22.3
M2_69
22.2
M2_70
22.0
M2_71
22.0
M2_72
21.8
M2_73
21.7
M2_74
21.7
M2_75
21.6
M2_76
21.5
M2_77
21.3
M2_78
21.2
M2_79
21.0
M2_80
20.8
M2_81
20.8
M2_82
20.5
M2_83
20.3
M2_84
20.1
M2_85
19.3
M2_86
19.2
M2_87
19.2
M2_88
19.2
M2_89
18.1
M2_90
18.0
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