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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:237.3 nTPM
GTEx:237.3 nTPM
FANTOM5:654.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001939Antibody CAB002788
Squamous epithelial cells LowNot detected





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 237.3
Samples: 170

Max nTPM: 1075.6
Min nTPM: 27.6
Std nTPM: 175.3
Median nTPM: 194.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1075.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 933.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 833.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 754.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 699.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 688.3
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 676.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 660.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 617.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 616.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 548.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 539.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 513.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 507.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 493.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 489.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 471.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 451.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 437.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 415.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 405.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 402.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 384.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 379.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 370.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 367.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 359.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 352.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 343.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 336.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 332.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 332.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 328.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 322.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 314.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 312.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 310.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 310.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 306.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 304.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 301.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 301.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 297.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 296.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 295.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 290.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 287.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 281.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 279.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 274.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 273.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 272.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 271.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 269.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 261.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 256.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 255.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 255.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 252.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 251.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 250.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 244.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 243.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 242.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 238.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 237.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 235.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 233.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 223.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 223.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 222.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 221.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 221.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 216.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 216.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 214.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 214.5
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 206.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 205.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 204.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 204.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 203.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 203.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 202.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 195.6
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 193.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 189.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 188.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 187.3
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 186.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 185.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 185.3
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 184.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 184.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 177.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 175.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 173.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 172.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 170.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 169.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 169.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 168.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 166.3
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 164.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 162.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 160.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 158.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 157.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 157.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 153.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 152.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 151.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 150.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 141.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 140.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 140.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 138.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 137.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 134.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 130.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 126.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 123.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 123.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 122.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 121.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 121.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 120.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 119.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 119.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 117.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 116.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 113.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 111.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 109.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 107.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 107.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 104.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 97.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 95.4
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 94.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 92.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 91.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 91.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 90.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 89.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 87.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 84.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 82.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 82.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 82.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 76.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 74.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 74.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 74.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 71.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 71.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 68.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 62.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 59.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 55.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 51.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 50.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 45.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 44.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 35.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 34.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 33.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 33.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 32.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 27.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

654.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 654.4
FF:10204-103F6 68 years, female 654.4

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