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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • EVOLUTION

  • MT3
EVOLUTIONARY PUTAMEN Show tissue menu
BRAIN41 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
HIPPOCAMPAL FORMATION HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:1338.5 nTPM
GTEx:5987.4 nTPM
FANTOM5:687.6 Scaled Tags Per Million
Pig:1979.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1338.5
Sample id Sample description nTPM
Putamen
nTPM: 1338.5
2482 Female, age 94, left hemisphere 1849.1
2647 Male, age 75, left hemisphere 1603.6
2466 Female, age 79, unknown 1386.1
1937 Female, age 91, right hemisphere 1251.3
2489 Female, age 72, unknown 1230.3
1838 Male, age 80, right hemisphere 1206.1
1829 Male, age 74, unknown 843.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5987.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 5987.4
Samples: 254

Max nTPM: 17752.4
Min nTPM: 1476.5
Std nTPM: 3000.8
Median nTPM: 5165.9
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 17752.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 17403.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 16014.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 15736.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 15066.4
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 15005.6
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 14340.5
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 13985.2
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 13696.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 13296.4
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 11880.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 11714.0
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 11572.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 11212.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 11203.6
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 11081.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 11059.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 11037.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 10930.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 10837.0
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 10672.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 10291.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 10269.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 10221.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 10088.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 10029.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 9976.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 9963.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 9875.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 9647.5
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 9635.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 9572.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 9461.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 9327.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 9303.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 9280.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 9158.2
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 9119.5
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 9090.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 9026.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 9004.6
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 8605.0
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 8564.2
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 8525.9
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 8506.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 8445.6
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 8357.9
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 8300.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 8241.5
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 8030.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 8006.6
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 7950.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 7876.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 7790.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 7751.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 7710.8
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 7704.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 7599.0
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 7594.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 7568.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 7544.5
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 7518.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 7493.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 7464.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 7429.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 7336.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 7318.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 7283.5
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 7263.5
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 7254.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 7152.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 7127.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 7083.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 7056.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 7054.4
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 6886.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 6814.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 6787.6
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 6783.4
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 6637.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 6624.2
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 6614.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 6574.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 6572.9
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 6537.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 6505.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 6346.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 6328.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 6303.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 6264.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 6262.7
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 6227.1
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 6220.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 6218.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 6189.1
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 6186.7
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 6172.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 6157.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 6153.8
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 6150.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6068.3
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 6051.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 6046.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 6027.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 5982.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 5883.2
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 5872.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 5864.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 5846.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 5844.9
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 5765.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 5716.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 5707.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 5676.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 5628.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 5575.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 5573.2
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 5445.6
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 5395.3
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 5390.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 5338.0
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 5336.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 5333.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 5323.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 5277.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 5206.6
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 5165.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 5165.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 5150.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 5136.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 5122.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 5036.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 5012.2
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 4985.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 4980.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 4926.3
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 4888.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 4879.2
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 4866.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 4841.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 4815.5
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 4790.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 4780.6
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 4775.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 4772.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 4768.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 4766.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 4761.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 4754.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 4743.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 4708.1
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 4704.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 4685.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 4652.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 4620.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 4577.8
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 4563.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 4539.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 4474.3
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 4469.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 4466.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 4463.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 4445.8
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 4442.3
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 4432.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 4426.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 4368.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 4350.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 4329.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 4293.3
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 4277.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 4258.9
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 4250.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 4205.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 4137.8
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 4129.7
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 4116.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 4060.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 4032.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 4026.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 4007.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 3993.8
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 3929.0
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 3886.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 3876.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 3861.5
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 3843.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 3817.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 3817.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 3772.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 3739.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 3676.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 3668.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 3645.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 3634.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 3633.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 3618.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 3609.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3598.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 3559.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 3546.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 3522.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 3519.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 3519.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 3511.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 3485.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 3483.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 3481.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 3468.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 3448.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 3416.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3351.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 3315.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 3286.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 3277.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 3276.6
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 3260.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 3203.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 3192.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 3174.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 3161.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 3118.1
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 3090.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 3061.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3057.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 3046.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 3037.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2994.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 2951.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 2938.0
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 2926.0
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 2889.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 2884.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 2851.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 2769.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 2768.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 2760.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 2739.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 2717.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 2701.3
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 2679.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 2678.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 2628.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 2622.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2559.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 2490.0
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 2482.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 2465.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 2383.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 2293.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1915.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1671.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1631.1
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 1476.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

687.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 687.6
FF:10176-103C5 60 years, female 687.6

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1979.1
Pig sample Sample description nTPM
Putamen
nTPM: 1979.1
Samples: 3

Max nTPM: 2873.6
Min nTPM: 1407.0
Sample B Female 1407.0
Sample C Male 2873.6
Sample D Male 1656.7

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