A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.3
nTPM
Monaco:
105.8
nTPM
Schmiedel:
117.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.3
HPA sample
nTPM
Classical monocyte nTPM: 17.6
Samples: 6
Max nTPM: 22.0
Min nTPM: 13.8
P10809_1003
20.1
P10809_1020
18.9
P10809_1039
16.3
P10809_1058
14.3
P10809_1080
22.0
P10809_1107
13.8
Intermediate monocyte nTPM: 27.4
Samples: 6
Max nTPM: 35.3
Min nTPM: 18.4
P10809_1004
35.3
P10809_1023
32.8
P10809_1042
30.6
P10809_1061
18.4
P10809_1081
23.3
P10809_1108
24.1
Non-classical monocyte nTPM: 39.3
Samples: 5
Max nTPM: 51.9
Min nTPM: 31.7
P10809_1005
39.4
P10809_1053
40.4
P10809_1072
51.9
P10809_1082
31.7
P10809_1109
33.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.8
Monaco sample
nTPM
Classical monocyte nTPM: 76.6
Samples: 4
Max nTPM: 100.0
Min nTPM: 56.1
RHH5313_R3680
56.1
RHH5221_R3593
100.0
RHH5250_R3622
78.9
RHH5279_R3651
71.4
Intermediate monocyte nTPM: 97.1
Samples: 4
Max nTPM: 129.7
Min nTPM: 81.4
RHH5314_R3681
85.1
RHH5222_R3594
129.7
RHH5251_R3623
92.3
RHH5280_R3652
81.4
Non-classical monocyte nTPM: 105.8
Samples: 4
Max nTPM: 128.7
Min nTPM: 92.2
RHH5315_R3682
92.2
RHH5223_R3595
128.7
RHH5252_R3624
96.4
RHH5281_R3653
105.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.2
Schmiedel sample id
TPM
Classical monocyte TPM: 41.2
Samples: 91
Max TPM: 64.0
Min TPM: 25.7
MONOCYTES_1
64.0
MONOCYTES_2
55.6
MONOCYTES_3
55.2
MONOCYTES_4
52.7
MONOCYTES_5
52.4
MONOCYTES_6
52.3
MONOCYTES_7
52.3
MONOCYTES_8
52.1
MONOCYTES_9
51.6
MONOCYTES_10
50.6
MONOCYTES_11
50.0
MONOCYTES_12
49.2
MONOCYTES_13
49.1
MONOCYTES_14
48.7
MONOCYTES_15
48.5
MONOCYTES_16
48.3
MONOCYTES_17
47.6
MONOCYTES_18
47.6
MONOCYTES_19
47.3
MONOCYTES_20
47.1
MONOCYTES_21
46.6
MONOCYTES_22
45.1
MONOCYTES_23
45.1
MONOCYTES_24
44.9
MONOCYTES_25
44.6
MONOCYTES_26
44.0
MONOCYTES_27
43.9
MONOCYTES_28
43.8
MONOCYTES_29
43.8
MONOCYTES_30
43.7
MONOCYTES_31
43.5
MONOCYTES_32
43.3
MONOCYTES_33
43.1
MONOCYTES_34
43.0
MONOCYTES_35
43.0
MONOCYTES_36
42.9
MONOCYTES_37
42.3
MONOCYTES_38
42.0
MONOCYTES_39
41.9
MONOCYTES_40
41.3
MONOCYTES_41
40.9
MONOCYTES_42
40.8
MONOCYTES_43
40.7
MONOCYTES_44
40.7
MONOCYTES_45
40.4
MONOCYTES_46
40.4
MONOCYTES_47
40.2
MONOCYTES_48
40.2
MONOCYTES_49
40.1
MONOCYTES_50
40.1
MONOCYTES_51
39.7
MONOCYTES_52
39.6
MONOCYTES_53
39.6
MONOCYTES_54
39.1
MONOCYTES_55
39.1
MONOCYTES_56
38.9
MONOCYTES_57
38.7
MONOCYTES_58
38.4
MONOCYTES_59
38.4
MONOCYTES_60
38.1
MONOCYTES_61
38.0
MONOCYTES_62
38.0
MONOCYTES_63
37.7
MONOCYTES_64
37.7
MONOCYTES_65
37.6
MONOCYTES_66
37.5
MONOCYTES_67
37.0
MONOCYTES_68
36.9
MONOCYTES_69
36.6
MONOCYTES_70
36.2
MONOCYTES_71
36.0
MONOCYTES_72
35.9
MONOCYTES_73
35.9
MONOCYTES_74
35.6
MONOCYTES_75
35.4
MONOCYTES_76
34.7
MONOCYTES_77
34.5
MONOCYTES_78
34.5
MONOCYTES_79
33.5
MONOCYTES_80
32.2
MONOCYTES_81
32.0
MONOCYTES_82
31.9
MONOCYTES_83
31.8
MONOCYTES_84
31.7
MONOCYTES_85
31.7
MONOCYTES_86
31.1
MONOCYTES_87
30.5
MONOCYTES_88
30.1
MONOCYTES_89
30.0
MONOCYTES_90
29.7
MONOCYTES_91
25.7
Show allShow less
Non-classical monocyte TPM: 117.2
Samples: 90
Max TPM: 188.0
Min TPM: 68.5
M2_1
188.0
M2_2
183.3
M2_3
174.5
M2_4
161.7
M2_5
156.0
M2_6
152.8
M2_7
151.6
M2_8
151.2
M2_9
148.1
M2_10
147.8
M2_11
146.6
M2_12
146.6
M2_13
144.2
M2_14
142.8
M2_15
140.0
M2_16
138.2
M2_17
136.8
M2_18
133.7
M2_19
133.6
M2_20
133.2
M2_21
132.2
M2_22
130.9
M2_23
128.1
M2_24
127.7
M2_25
127.6
M2_26
127.0
M2_27
126.2
M2_28
125.0
M2_29
124.8
M2_30
124.5
M2_31
123.1
M2_32
120.2
M2_33
120.1
M2_34
119.9
M2_35
119.7
M2_36
119.7
M2_37
119.3
M2_38
118.6
M2_39
117.9
M2_40
117.8
M2_41
117.1
M2_42
116.8
M2_43
114.8
M2_44
114.4
M2_45
113.7
M2_46
113.5
M2_47
113.2
M2_48
113.2
M2_49
112.2
M2_50
111.1
M2_51
111.0
M2_52
110.3
M2_53
108.7
M2_54
108.6
M2_55
108.1
M2_56
108.0
M2_57
107.7
M2_58
107.4
M2_59
105.9
M2_60
104.4
M2_61
103.9
M2_62
103.8
M2_63
103.3
M2_64
103.0
M2_65
102.4
M2_66
101.4
M2_67
101.0
M2_68
100.1
M2_69
100.0
M2_70
99.0
M2_71
98.9
M2_72
98.7
M2_73
98.5
M2_74
98.3
M2_75
97.6
M2_76
97.4
M2_77
96.1
M2_78
95.0
M2_79
94.8
M2_80
94.1
M2_81
93.1
M2_82
93.1
M2_83
91.4
M2_84
90.4
M2_85
90.4
M2_86
89.8
M2_87
86.7
M2_88
85.9
M2_89
74.5
M2_90
68.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
