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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:699.5 nTPM
FANTOM5:599.2 Scaled Tags Per Million
Pig:777.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Glial cells Not detectedNot detectedNot detectedHigh
Neuronal cells Not detectedLowMediumNot detected









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

699.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 699.5
Samples: 300

Max nTPM: 2220.1
Min nTPM: 404.1
Std nTPM: 201.5
Median nTPM: 668.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 2220.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 2024.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1998.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1223.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1139.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1125.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1114.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1101.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1066.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1048.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1018.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1013.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1013.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 997.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 956.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 955.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 945.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 930.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 928.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 921.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 920.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 911.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 903.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 901.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 897.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 894.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 890.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 889.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 879.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 878.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 877.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 874.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 872.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 870.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 869.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 867.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 866.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 866.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 861.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 861.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 857.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 856.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 853.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 852.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 849.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 840.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 837.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 835.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 827.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 827.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 826.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 825.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 825.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 825.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 825.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 822.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 822.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 822.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 820.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 817.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 817.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 816.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 815.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 812.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 808.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 807.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 804.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 804.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 803.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 803.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 803.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 798.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 798.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 795.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 795.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 789.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 789.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 788.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 783.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 781.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 776.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 776.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 774.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 774.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 765.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 763.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 762.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 760.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 758.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 758.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 754.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 750.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 749.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 748.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 747.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 743.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 741.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 740.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 737.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 736.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 736.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 733.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 733.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 730.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 730.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 727.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 727.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 724.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 723.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 719.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 719.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 718.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 718.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 717.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 716.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 716.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 714.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 712.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 709.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 709.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 707.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 704.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 703.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 703.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 702.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 701.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 698.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 697.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 696.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 696.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 693.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 693.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 693.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 692.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 690.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 688.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 688.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 688.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 688.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 686.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 685.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 684.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 681.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 675.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 674.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 673.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 673.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 673.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 670.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 669.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 667.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 665.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 664.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 663.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 661.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 660.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 660.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 658.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 658.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 657.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 657.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 657.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 655.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 654.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 653.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 652.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 648.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 647.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 642.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 640.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 640.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 638.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 637.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 634.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 632.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 631.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 628.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 627.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 627.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 627.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 624.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 622.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 622.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 622.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 621.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 620.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 620.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 619.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 616.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 614.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 612.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 612.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 612.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 611.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 609.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 609.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 608.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 607.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 605.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 604.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 602.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 602.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 599.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 598.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 598.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 597.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 597.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 597.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 597.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 596.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 595.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 594.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 594.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 593.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 592.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 592.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 591.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 591.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 591.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 590.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 588.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 585.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 584.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 584.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 584.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 584.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 583.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 578.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 578.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 578.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 577.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 575.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 575.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 574.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 573.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 573.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 572.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 570.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 570.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 567.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 563.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 562.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 561.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 559.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 556.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 555.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 551.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 551.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 548.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 548.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 547.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 546.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 545.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 544.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 543.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 542.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 540.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 537.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 536.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 534.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 529.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 527.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 527.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 526.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 521.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 521.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 519.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 519.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 518.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 516.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 515.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 514.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 513.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 513.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 509.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 509.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 505.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 503.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 501.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 500.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 496.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 496.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 489.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 484.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 474.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 473.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 471.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 463.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 453.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 450.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 444.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 442.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 440.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 438.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 431.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 427.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 415.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 411.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 410.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 404.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

599.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 599.2
FF:10164-103B2 76 years, female 599.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

777.3
Pig sample Sample description nTPM
Caudate
nTPM: 777.3
Samples: 4

Max nTPM: 850.9
Min nTPM: 672.9
Sample A Female 802.7
Sample B Female 850.9
Sample C Male 782.7
Sample D Male 672.9

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