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TISSUE PRIMARY DATA CERVIX Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Cervix
Tissue proteome
Cervix
Tissue methods
CERVIX - Expression summary
Protein expression
Cervixi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:709.6 nTPM
HPA:709.6 nTPM
GTEx:649.8 nTPM
FANTOM5:720.7 Scaled Tags Per Million

CERVIX - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Glandular cells Not detectedLowNot detectedLow
Squamous epithelial cells Not detectedLowNot detectedMedium







CERVIX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

709.6
overview
Female, age 44
Cervix sample 374
nTPM: 824.6
Cell types%
Glandular cells:
10

Squamous epithelial cells:
5

Smooth muscle cells:
65

Other cell types:
20

overview
Female, age 53
Cervix sample 383
nTPM: 594.5
Cell types%
Glandular cells:
10

Squamous epithelial cells:
5

Smooth muscle cells:
65

Other cell types:
20


CERVIX - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

649.8
GTEx sample id Sample description nTPM
Cervix - Ectocervix
Average nTPM: 649.8
Samples: 24

Max nTPM: 835.5
Min nTPM: 475.6
Std nTPM: 87.3
Median nTPM: 655.4
GTEX-QVJO-2726-SM-GQ1CG 60-69 years, female 835.5
GTEX-T5JW-0726-SM-4DM6D 20-29 years, female 802.2
GTEX-T2IS-2326-SM-HL9TW 20-29 years, female 757.9
GTEX-TSE9-2826-SM-4DXTF 60-69 years, female 731.9
GTEX-SN8G-2126-SM-GPI8G 50-59 years, female 713.6
GTEX-QCQG-1026-SM-GOQYG 50-59 years, female 710.2
GTEX-S4UY-1426-SM-4AD6Y 40-49 years, female 697.2
GTEX-TML8-0826-SM-GNIN4 40-49 years, female 690.2
GTEX-T6MO-1326-SM-H7OGZ 40-49 years, female 686.7
GTEX-POMQ-1526-SM-HL9TL 20-29 years, female 662.5
GTEX-Q2AG-2326-SM-EZ6KY 40-49 years, female 660.4
GTEX-P4PP-2226-SM-GRR1L 30-39 years, female 658.6
GTEX-OHPL-2126-SM-GPRYM 60-69 years, female 652.2
GTEX-QDT8-2626-SM-GPI86 30-39 years, female 640.6
GTEX-Q734-1526-SM-GQ1EE 40-49 years, female 639.4
GTEX-P78B-2326-SM-EZ6KO 40-49 years, female 634.5
GTEX-TMMY-2026-SM-GPI8C 40-49 years, female 602.1
GTEX-S341-1126-SM-4AD6T 40-49 years, female 596.9
GTEX-PX3G-2226-SM-GOQZQ 20-29 years, female 590.9
GTEX-PWN1-2126-SM-H6Q83 40-49 years, female 572.8
GTEX-S32W-1526-SM-4AD6Z 50-59 years, female 566.2
GTEX-P4QT-2126-SM-H6Q7H 50-59 years, female 534.9
GTEX-R55G-1826-SM-HL9TM 40-49 years, female 481.3
GTEX-N7MT-0826-SM-EV794 60-69 years, female 475.6
Show allShow less
Cervix - Endocervix
Average nTPM: 613.0
Samples: 23

Max nTPM: 844.7
Min nTPM: 431.3
Std nTPM: 109.8
Median nTPM: 604.6
GTEX-T2IS-2426-SM-HL9U4 20-29 years, female 844.7
GTEX-OHPL-2226-SM-G9ER8 60-69 years, female 772.2
GTEX-QVJO-2826-SM-F21IP 60-69 years, female 737.6
GTEX-QCQG-1126-SM-GOQYH 50-59 years, female 735.8
GTEX-PLZ4-2226-SM-EZ6KS 50-59 years, female 735.5
GTEX-TSE9-2726-SM-4DXSQ 60-69 years, female 716.1
GTEX-RWS6-1626-SM-GOQYA 60-69 years, female 712.5
GTEX-S4UY-1526-SM-GNTAF 40-49 years, female 676.0
GTEX-ZPIC-1326-SM-DO91Y 40-49 years, female 653.0
GTEX-TML8-0726-SM-4DXTT 40-49 years, female 613.9
GTEX-RU1J-1126-SM-GPRWI 20-29 years, female 605.8
GTEX-PWN1-2226-SM-HAUZA 40-49 years, female 604.6
GTEX-T5JW-0826-SM-EYYVD 20-29 years, female 585.1
GTEX-T6MO-1426-SM-4DM73 40-49 years, female 573.5
GTEX-Q734-1726-SM-HL9TR 40-49 years, female 567.6
GTEX-P4PP-2126-SM-H7OF1 30-39 years, female 541.1
GTEX-N7MT-0926-SM-HAUYT 60-69 years, female 534.2
GTEX-S341-1326-SM-4AD72 40-49 years, female 529.6
GTEX-S32W-1626-SM-4AD6G 50-59 years, female 516.4
GTEX-OHPK-2226-SM-HL9TP 50-59 years, female 485.9
GTEX-PX3G-2126-SM-HL9TS 20-29 years, female 482.7
GTEX-OHPN-2226-SM-E9TI7 60-69 years, female 444.6
GTEX-P78B-2426-SM-EWRM2 40-49 years, female 431.3
Show allShow less

CERVIX - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

720.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Cervix
Scaled Tags Per Million: 720.7
FF:10013-101C4 40,46,57,65 years, female 720.7

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