BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.8 nTPM
HPA Brain:127.1 nTPM
GTEx:67.8 nTPM
FANTOM5:289.7 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:103.3 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 127.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 72.9
1781 Male, age 74, unknown 85.7
2288 Male, age 75, left hemisphere 83.9
2289 Male, age 61, right hemisphere 79.2
2481 Female, age 94, left hemisphere 74.8
2290 Female, age 72, unknown 71.0
2846 Female, age 79, unknown 69.6
1854 Male, age 80, left hemisphere 60.8
1857 Female, age 85, left hemisphere 57.9
Globus pallidus, externus
nTPM: 127.1
2646 Male, age 61, right hemisphere 169.8
2567 Female, age 72, unknown 150.2
1996 Male, age 80, right hemisphere 125.5
2772 Female, age 79, unknown 103.2
2395 Male, age 75, both hemispheres 86.6
Globus pallidus, internus
nTPM: 124.6
2111 Female, age 85, right hemisphere 147.9
2566 Female, age 72, unknown 132.5
2778 Female, age 91, both hemispheres 128.3
1818 Male, age 74, unknown 117.9
2483 Female, age 94, right hemisphere 116.4
2037 Male, age 80, right hemisphere 115.3
2287 Male, age 75, right hemisphere 114.1
Nucleus accumbens
nTPM: 74.0
2698 Female, age 72, unknown 89.1
2391 Female, age 94, left hemisphere 84.3
2732 Male, age 80, right hemisphere 81.4
1783 Male, age 74, unknown 75.7
2286 Male, age 75, left hemisphere 72.6
1806 Female, age 85, left hemisphere 72.2
2824 Male, age 61, right hemisphere 71.2
1856 Female, age 91, right hemisphere 45.5
Nucleus basalis of Meynert
nTPM: 97.2
2569 Male, age 61, both hemispheres 171.5
2484 Female, age 94, left hemisphere 77.2
2821 Male, age 75, both hemispheres 74.3
2393 Male, age 80, right hemisphere 65.8
Nucleus of the diagonal band
nTPM: 80.8
2029 Male, age 61, right hemisphere 101.5
1979 Male, age 74, unknown 81.2
2195 Female, age 85, both hemispheres 78.7
2775 Male, age 80, right hemisphere 73.6
1812 Female, age 91, both hemispheres 68.8
Putamen
nTPM: 77.3
2647 Male, age 75, left hemisphere 113.1
2489 Female, age 72, unknown 91.3
1829 Male, age 74, unknown 88.1
2482 Female, age 94, left hemisphere 74.8
1937 Female, age 91, right hemisphere 63.5
2466 Female, age 79, unknown 61.9
1838 Male, age 80, right hemisphere 48.2
Septal nuclei
nTPM: 82.1
2199 Male, age 80, right hemisphere 92.4
2059 Female, age 85, both hemispheres 89.7
2394 Male, age 61, left hemisphere 86.5
2629 Female, age 94, right hemisphere 81.8
1960 Male, age 74, unknown 81.4
2009 Female, age 91, both hemispheres 71.6
2031 Female, age 72, unknown 71.6
Stria terminalis, bed nucleus
nTPM: 75.2
1974 Female, age 91, both hemispheres 81.3
2201 Male, age 74, unknown 73.3
2486 Female, age 94, both hemispheres 70.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 67.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.9
Samples: 300

Max nTPM: 215.6
Min nTPM: 9.2
Std nTPM: 20.5
Median nTPM: 53.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 215.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 125.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 124.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 121.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 121.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 121.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 118.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 106.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 104.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 101.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 96.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.2
Samples: 285

Max nTPM: 119.0
Min nTPM: 21.8
Std nTPM: 19.2
Median nTPM: 43.6
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 119.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 115.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 115.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 111.6
GTEX-1MCQQ-0011-R6b-SM-F3425 60-69 years, male 111.0
GTEX-15SHU-0011-R6a-SM-GPRXC 40-49 years, female 108.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 104.5
GTEX-11ZU8-0011-R6b-SM-GJ3PZ 60-69 years, male 102.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 101.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 99.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 99.0
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Brain - Putamen (basal ganglia)
Average nTPM: 67.8
Samples: 254

Max nTPM: 164.4
Min nTPM: 21.5
Std nTPM: 24.6
Median nTPM: 61.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 164.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 163.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 149.3
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 149.0
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 137.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 135.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 132.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 125.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 125.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 122.9
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 122.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 289.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.8
FF:10164-103B2 76 years, female 99.8
Nucleus accumbens
Scaled Tags Per Million: 99.7
FF:10037-101F1 23-56 years, mixed 99.7
Putamen
Scaled Tags Per Million: 92.6
FF:10176-103C5 60 years, female 92.6
Globus pallidus
Scaled Tags Per Million: 289.7
FF:10175-103C4 60 years, female 320.1
FF:10161-103A8 76 years, female 259.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 44.3
Pig sample Sample description nTPM
Caudate
nTPM: 36.7
Samples: 4

Max nTPM: 43.9
Min nTPM: 31.1
Sample A Female 31.1
Sample B Female 36.8
Sample C Male 43.9
Sample D Male 35.1
Putamen
nTPM: 44.3
Samples: 4

Max nTPM: 54.7
Min nTPM: 38.7
Sample A Female 40.4
Sample B Female 38.7
Sample C Male 43.4
Sample D Male 54.7
Septum
nTPM: 29.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 22.1
Sample A Female 31.0
Sample B Female 30.5
Sample C Male 22.1
Sample D Male 33.5
Ventral pallidum
nTPM: 41.8
Samples: 4

Max nTPM: 50.3
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 41.0
Sample C Male 45.1
Sample D Male 50.3

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 103.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 103.4
Samples: 4

Max nTPM: 108.9
Min nTPM: 92.8
Sample A Male 92.8
Sample B Male 108.8
Sample C Female 108.9
Sample D Female 102.9
Septum
nTPM: 67.4
Samples: 4

Max nTPM: 73.1
Min nTPM: 62.2
Sample A Male 67.6
Sample B Male 62.2
Sample C Female 66.5
Sample D Female 73.1
Ventral forebrain
nTPM: 95.0
Samples: 4

Max nTPM: 100.5
Min nTPM: 83.5
Sample A Male 100.5
Sample B Male 83.5
Sample C Female 97.0
Sample D Female 99.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.7
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 6.7
Pallidum
Expression energy: 5.6
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 5.6

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