A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
26.2
nTPM
Schmiedel:
16.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.5
P10809_1003
3.6
P10809_1020
1.6
P10809_1039
0.8
P10809_1058
1.9
P10809_1080
1.0
P10809_1107
0.5
Intermediate monocyte nTPM: 1.0
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.1
P10809_1004
2.1
P10809_1023
1.6
P10809_1042
0.1
P10809_1061
1.3
P10809_1081
0.3
P10809_1108
0.8
Non-classical monocyte nTPM: 1.4
Samples: 5
Max nTPM: 2.8
Min nTPM: 0.1
P10809_1005
2.4
P10809_1053
2.8
P10809_1072
0.1
P10809_1082
0.7
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Monaco sample
nTPM
Classical monocyte nTPM: 22.8
Samples: 4
Max nTPM: 28.4
Min nTPM: 15.1
RHH5313_R3680
15.1
RHH5221_R3593
25.6
RHH5250_R3622
28.4
RHH5279_R3651
22.2
Intermediate monocyte nTPM: 22.8
Samples: 4
Max nTPM: 37.2
Min nTPM: 16.0
RHH5314_R3681
16.0
RHH5222_R3594
37.2
RHH5251_R3623
18.8
RHH5280_R3652
19.1
Non-classical monocyte nTPM: 26.2
Samples: 4
Max nTPM: 28.9
Min nTPM: 23.4
RHH5315_R3682
28.1
RHH5223_R3595
28.9
RHH5252_R3624
24.4
RHH5281_R3653
23.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.7
Schmiedel sample id
TPM
Classical monocyte TPM: 16.0
Samples: 91
Max TPM: 22.8
Min TPM: 10.1
MONOCYTES_1
22.8
MONOCYTES_2
21.9
MONOCYTES_3
21.2
MONOCYTES_4
21.1
MONOCYTES_5
21.0
MONOCYTES_6
20.8
MONOCYTES_7
20.7
MONOCYTES_8
20.5
MONOCYTES_9
20.1
MONOCYTES_10
19.9
MONOCYTES_11
19.8
MONOCYTES_12
19.8
MONOCYTES_13
19.7
MONOCYTES_14
19.6
MONOCYTES_15
19.4
MONOCYTES_16
19.4
MONOCYTES_17
19.3
MONOCYTES_18
19.1
MONOCYTES_19
18.8
MONOCYTES_20
18.7
MONOCYTES_21
18.6
MONOCYTES_22
18.2
MONOCYTES_23
18.0
MONOCYTES_24
17.8
MONOCYTES_25
17.6
MONOCYTES_26
17.6
MONOCYTES_27
17.5
MONOCYTES_28
17.3
MONOCYTES_29
17.1
MONOCYTES_30
17.0
MONOCYTES_31
16.9
MONOCYTES_32
16.9
MONOCYTES_33
16.9
MONOCYTES_34
16.8
MONOCYTES_35
16.7
MONOCYTES_36
16.7
MONOCYTES_37
16.4
MONOCYTES_38
16.4
MONOCYTES_39
16.4
MONOCYTES_40
16.3
MONOCYTES_41
16.2
MONOCYTES_42
16.2
MONOCYTES_43
16.2
MONOCYTES_44
16.1
MONOCYTES_45
15.9
MONOCYTES_46
15.9
MONOCYTES_47
15.9
MONOCYTES_48
15.9
MONOCYTES_49
15.8
MONOCYTES_50
15.8
MONOCYTES_51
15.7
MONOCYTES_52
15.7
MONOCYTES_53
15.6
MONOCYTES_54
15.6
MONOCYTES_55
15.5
MONOCYTES_56
15.5
MONOCYTES_57
15.5
MONOCYTES_58
15.1
MONOCYTES_59
14.7
MONOCYTES_60
14.7
MONOCYTES_61
14.7
MONOCYTES_62
14.6
MONOCYTES_63
14.3
MONOCYTES_64
14.2
MONOCYTES_65
13.9
MONOCYTES_66
13.8
MONOCYTES_67
13.7
MONOCYTES_68
13.6
MONOCYTES_69
13.3
MONOCYTES_70
13.3
MONOCYTES_71
13.2
MONOCYTES_72
13.1
MONOCYTES_73
12.8
MONOCYTES_74
12.7
MONOCYTES_75
12.5
MONOCYTES_76
12.5
MONOCYTES_77
12.4
MONOCYTES_78
12.4
MONOCYTES_79
12.3
MONOCYTES_80
12.3
MONOCYTES_81
12.3
MONOCYTES_82
12.2
MONOCYTES_83
12.1
MONOCYTES_84
12.1
MONOCYTES_85
11.7
MONOCYTES_86
11.6
MONOCYTES_87
11.2
MONOCYTES_88
11.1
MONOCYTES_89
10.8
MONOCYTES_90
10.5
MONOCYTES_91
10.1
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Non-classical monocyte TPM: 16.7
Samples: 90
Max TPM: 24.0
Min TPM: 8.2
M2_1
24.0
M2_2
23.4
M2_3
22.9
M2_4
22.9
M2_5
22.8
M2_6
22.8
M2_7
22.4
M2_8
21.7
M2_9
21.7
M2_10
21.6
M2_11
21.2
M2_12
20.8
M2_13
20.5
M2_14
20.4
M2_15
20.2
M2_16
20.2
M2_17
20.1
M2_18
20.0
M2_19
19.9
M2_20
19.9
M2_21
19.8
M2_22
19.1
M2_23
18.9
M2_24
18.9
M2_25
18.7
M2_26
18.5
M2_27
18.4
M2_28
18.3
M2_29
18.2
M2_30
18.0
M2_31
17.9
M2_32
17.8
M2_33
17.7
M2_34
17.6
M2_35
17.6
M2_36
17.5
M2_37
17.5
M2_38
17.3
M2_39
17.3
M2_40
17.3
M2_41
17.2
M2_42
17.1
M2_43
17.1
M2_44
17.0
M2_45
17.0
M2_46
16.9
M2_47
16.9
M2_48
16.8
M2_49
16.7
M2_50
16.6
M2_51
16.6
M2_52
16.5
M2_53
16.5
M2_54
16.5
M2_55
16.5
M2_56
16.3
M2_57
16.3
M2_58
16.1
M2_59
15.9
M2_60
15.7
M2_61
15.4
M2_62
15.3
M2_63
15.0
M2_64
14.9
M2_65
14.7
M2_66
14.7
M2_67
14.7
M2_68
14.4
M2_69
14.3
M2_70
13.9
M2_71
13.6
M2_72
13.6
M2_73
13.4
M2_74
13.3
M2_75
13.3
M2_76
13.1
M2_77
12.9
M2_78
12.8
M2_79
12.6
M2_80
12.1
M2_81
12.0
M2_82
11.8
M2_83
11.3
M2_84
11.3
M2_85
11.0
M2_86
10.5
M2_87
9.8
M2_88
9.6
M2_89
9.1
M2_90
8.2
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