A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.3
nTPM
Monaco:
22.6
nTPM
Schmiedel:
15.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.3
HPA sample
nTPM
Classical monocyte nTPM: 5.5
Samples: 6
Max nTPM: 6.9
Min nTPM: 4.6
P10809_1003
4.6
P10809_1020
6.9
P10809_1039
4.6
P10809_1058
5.4
P10809_1080
6.7
P10809_1107
4.8
Intermediate monocyte nTPM: 6.6
Samples: 6
Max nTPM: 8.2
Min nTPM: 3.2
P10809_1004
7.2
P10809_1023
5.7
P10809_1042
3.2
P10809_1061
7.8
P10809_1081
8.2
P10809_1108
7.5
Non-classical monocyte nTPM: 8.3
Samples: 5
Max nTPM: 10.6
Min nTPM: 7.1
P10809_1005
7.9
P10809_1053
7.1
P10809_1072
7.9
P10809_1082
8.2
P10809_1109
10.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
Monaco sample
nTPM
Classical monocyte nTPM: 16.0
Samples: 4
Max nTPM: 19.7
Min nTPM: 12.8
RHH5313_R3680
16.8
RHH5221_R3593
12.8
RHH5250_R3622
19.7
RHH5279_R3651
14.7
Intermediate monocyte nTPM: 19.2
Samples: 4
Max nTPM: 23.9
Min nTPM: 11.7
RHH5314_R3681
22.2
RHH5222_R3594
11.7
RHH5251_R3623
23.9
RHH5280_R3652
19.1
Non-classical monocyte nTPM: 22.6
Samples: 4
Max nTPM: 24.6
Min nTPM: 21.0
RHH5315_R3682
24.6
RHH5223_R3595
21.0
RHH5252_R3624
22.0
RHH5281_R3653
22.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
Schmiedel sample id
TPM
Classical monocyte TPM: 6.5
Samples: 91
Max TPM: 11.4
Min TPM: 2.4
MONOCYTES_1
11.4
MONOCYTES_2
10.5
MONOCYTES_3
10.5
MONOCYTES_4
10.2
MONOCYTES_5
10.0
MONOCYTES_6
9.8
MONOCYTES_7
9.4
MONOCYTES_8
9.4
MONOCYTES_9
9.3
MONOCYTES_10
9.1
MONOCYTES_11
8.7
MONOCYTES_12
8.5
MONOCYTES_13
8.4
MONOCYTES_14
8.3
MONOCYTES_15
8.2
MONOCYTES_16
8.2
MONOCYTES_17
8.1
MONOCYTES_18
8.1
MONOCYTES_19
8.0
MONOCYTES_20
7.8
MONOCYTES_21
7.8
MONOCYTES_22
7.8
MONOCYTES_23
7.8
MONOCYTES_24
7.7
MONOCYTES_25
7.7
MONOCYTES_26
7.6
MONOCYTES_27
7.6
MONOCYTES_28
7.5
MONOCYTES_29
7.4
MONOCYTES_30
7.3
MONOCYTES_31
7.1
MONOCYTES_32
7.1
MONOCYTES_33
7.1
MONOCYTES_34
6.9
MONOCYTES_35
6.9
MONOCYTES_36
6.9
MONOCYTES_37
6.8
MONOCYTES_38
6.8
MONOCYTES_39
6.8
MONOCYTES_40
6.7
MONOCYTES_41
6.7
MONOCYTES_42
6.6
MONOCYTES_43
6.5
MONOCYTES_44
6.5
MONOCYTES_45
6.5
MONOCYTES_46
6.5
MONOCYTES_47
6.4
MONOCYTES_48
6.4
MONOCYTES_49
6.4
MONOCYTES_50
6.3
MONOCYTES_51
6.3
MONOCYTES_52
6.1
MONOCYTES_53
6.1
MONOCYTES_54
6.0
MONOCYTES_55
5.9
MONOCYTES_56
5.9
MONOCYTES_57
5.7
MONOCYTES_58
5.6
MONOCYTES_59
5.5
MONOCYTES_60
5.5
MONOCYTES_61
5.5
MONOCYTES_62
5.4
MONOCYTES_63
5.3
MONOCYTES_64
5.3
MONOCYTES_65
5.3
MONOCYTES_66
5.3
MONOCYTES_67
5.3
MONOCYTES_68
5.3
MONOCYTES_69
5.2
MONOCYTES_70
5.0
MONOCYTES_71
4.9
MONOCYTES_72
4.9
MONOCYTES_73
4.9
MONOCYTES_74
4.8
MONOCYTES_75
4.7
MONOCYTES_76
4.7
MONOCYTES_77
4.7
MONOCYTES_78
4.7
MONOCYTES_79
4.4
MONOCYTES_80
4.3
MONOCYTES_81
4.2
MONOCYTES_82
4.1
MONOCYTES_83
4.0
MONOCYTES_84
4.0
MONOCYTES_85
4.0
MONOCYTES_86
3.8
MONOCYTES_87
3.6
MONOCYTES_88
3.4
MONOCYTES_89
3.2
MONOCYTES_90
3.0
MONOCYTES_91
2.4
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Non-classical monocyte TPM: 15.7
Samples: 90
Max TPM: 23.6
Min TPM: 8.7
M2_1
23.6
M2_2
23.5
M2_3
23.1
M2_4
22.7
M2_5
22.6
M2_6
22.5
M2_7
22.1
M2_8
21.0
M2_9
20.8
M2_10
20.8
M2_11
20.2
M2_12
20.2
M2_13
20.1
M2_14
19.9
M2_15
19.3
M2_16
19.2
M2_17
18.9
M2_18
18.9
M2_19
18.8
M2_20
18.7
M2_21
18.1
M2_22
17.9
M2_23
17.9
M2_24
17.7
M2_25
17.5
M2_26
17.3
M2_27
17.2
M2_28
16.9
M2_29
16.8
M2_30
16.6
M2_31
16.6
M2_32
16.5
M2_33
16.4
M2_34
16.2
M2_35
16.0
M2_36
15.8
M2_37
15.7
M2_38
15.7
M2_39
15.5
M2_40
15.5
M2_41
15.4
M2_42
15.4
M2_43
15.4
M2_44
15.3
M2_45
15.3
M2_46
15.3
M2_47
15.3
M2_48
15.2
M2_49
15.1
M2_50
15.0
M2_51
14.9
M2_52
14.9
M2_53
14.9
M2_54
14.7
M2_55
14.6
M2_56
14.5
M2_57
14.4
M2_58
14.3
M2_59
14.3
M2_60
14.3
M2_61
14.3
M2_62
14.1
M2_63
14.1
M2_64
14.1
M2_65
14.0
M2_66
13.9
M2_67
13.9
M2_68
13.6
M2_69
13.4
M2_70
13.4
M2_71
13.2
M2_72
13.2
M2_73
13.1
M2_74
12.9
M2_75
12.7
M2_76
12.0
M2_77
11.8
M2_78
11.7
M2_79
11.5
M2_80
11.5
M2_81
11.2
M2_82
11.1
M2_83
11.0
M2_84
10.9
M2_85
10.7
M2_86
10.5
M2_87
9.9
M2_88
9.8
M2_89
9.4
M2_90
8.7
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