A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
91.1
nTPM
Schmiedel:
38.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.9
P10809_1003
2.1
P10809_1020
1.1
P10809_1039
1.2
P10809_1058
0.9
P10809_1080
0.9
P10809_1107
2.9
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.3
P10809_1004
0.3
P10809_1023
0.9
P10809_1042
1.0
P10809_1061
1.9
P10809_1081
0.6
P10809_1108
0.8
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.1
Monaco sample
nTPM
Classical monocyte nTPM: 91.1
Samples: 4
Max nTPM: 234.8
Min nTPM: 9.6
RHH5313_R3680
73.6
RHH5221_R3593
234.8
RHH5250_R3622
9.6
RHH5279_R3651
46.2
Intermediate monocyte nTPM: 30.7
Samples: 4
Max nTPM: 80.8
Min nTPM: 1.8
RHH5314_R3681
27.2
RHH5222_R3594
80.8
RHH5251_R3623
1.8
RHH5280_R3652
12.9
Non-classical monocyte nTPM: 5.5
Samples: 4
Max nTPM: 17.6
Min nTPM: 0.6
RHH5315_R3682
2.2
RHH5223_R3595
17.6
RHH5252_R3624
0.6
RHH5281_R3653
1.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.7
Schmiedel sample id
TPM
Classical monocyte TPM: 38.7
Samples: 91
Max TPM: 401.8
Min TPM: 5.9
MONOCYTES_1
401.8
MONOCYTES_2
235.4
MONOCYTES_3
141.9
MONOCYTES_4
109.7
MONOCYTES_5
107.7
MONOCYTES_6
105.0
MONOCYTES_7
95.8
MONOCYTES_8
94.9
MONOCYTES_9
83.2
MONOCYTES_10
75.0
MONOCYTES_11
65.6
MONOCYTES_12
63.8
MONOCYTES_13
60.1
MONOCYTES_14
58.7
MONOCYTES_15
48.8
MONOCYTES_16
47.9
MONOCYTES_17
47.3
MONOCYTES_18
47.1
MONOCYTES_19
47.0
MONOCYTES_20
46.9
MONOCYTES_21
44.0
MONOCYTES_22
43.0
MONOCYTES_23
41.3
MONOCYTES_24
39.8
MONOCYTES_25
38.4
MONOCYTES_26
37.1
MONOCYTES_27
37.0
MONOCYTES_28
36.9
MONOCYTES_29
36.8
MONOCYTES_30
36.4
MONOCYTES_31
36.2
MONOCYTES_32
35.0
MONOCYTES_33
34.9
MONOCYTES_34
34.8
MONOCYTES_35
32.0
MONOCYTES_36
28.5
MONOCYTES_37
27.3
MONOCYTES_38
27.1
MONOCYTES_39
26.9
MONOCYTES_40
26.9
MONOCYTES_41
25.9
MONOCYTES_42
24.9
MONOCYTES_43
24.7
MONOCYTES_44
24.6
MONOCYTES_45
23.9
MONOCYTES_46
23.2
MONOCYTES_47
23.2
MONOCYTES_48
22.7
MONOCYTES_49
22.6
MONOCYTES_50
22.4
MONOCYTES_51
21.7
MONOCYTES_52
21.6
MONOCYTES_53
21.1
MONOCYTES_54
20.0
MONOCYTES_55
19.5
MONOCYTES_56
19.3
MONOCYTES_57
19.0
MONOCYTES_58
18.8
MONOCYTES_59
18.7
MONOCYTES_60
17.4
MONOCYTES_61
17.2
MONOCYTES_62
17.0
MONOCYTES_63
16.4
MONOCYTES_64
16.3
MONOCYTES_65
16.2
MONOCYTES_66
15.9
MONOCYTES_67
15.7
MONOCYTES_68
15.4
MONOCYTES_69
15.3
MONOCYTES_70
15.1
MONOCYTES_71
15.1
MONOCYTES_72
15.0
MONOCYTES_73
15.0
MONOCYTES_74
14.8
MONOCYTES_75
14.7
MONOCYTES_76
14.4
MONOCYTES_77
13.6
MONOCYTES_78
12.4
MONOCYTES_79
12.1
MONOCYTES_80
11.8
MONOCYTES_81
11.6
MONOCYTES_82
11.2
MONOCYTES_83
11.0
MONOCYTES_84
10.9
MONOCYTES_85
10.7
MONOCYTES_86
10.4
MONOCYTES_87
10.0
MONOCYTES_88
9.2
MONOCYTES_89
8.4
MONOCYTES_90
6.8
MONOCYTES_91
5.9
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Non-classical monocyte TPM: 1.2
Samples: 90
Max TPM: 41.8
Min TPM: 0.0
M2_1
41.8
M2_2
19.0
M2_3
3.4
M2_4
3.0
M2_5
2.3
M2_6
1.7
M2_7
1.5
M2_8
1.5
M2_9
1.4
M2_10
1.3
M2_11
1.1
M2_12
0.9
M2_13
0.9
M2_14
0.8
M2_15
0.8
M2_16
0.8
M2_17
0.8
M2_18
0.8
M2_19
0.8
M2_20
0.7
M2_21
0.7
M2_22
0.7
M2_23
0.7
M2_24
0.7
M2_25
0.7
M2_26
0.6
M2_27
0.6
M2_28
0.6
M2_29
0.6
M2_30
0.6
M2_31
0.5
M2_32
0.5
M2_33
0.5
M2_34
0.5
M2_35
0.5
M2_36
0.5
M2_37
0.5
M2_38
0.5
M2_39
0.4
M2_40
0.4
M2_41
0.4
M2_42
0.4
M2_43
0.4
M2_44
0.4
M2_45
0.4
M2_46
0.3
M2_47
0.3
M2_48
0.3
M2_49
0.3
M2_50
0.3
M2_51
0.3
M2_52
0.3
M2_53
0.3
M2_54
0.3
M2_55
0.3
M2_56
0.3
M2_57
0.3
M2_58
0.3
M2_59
0.3
M2_60
0.2
M2_61
0.2
M2_62
0.2
M2_63
0.2
M2_64
0.2
M2_65
0.2
M2_66
0.2
M2_67
0.2
M2_68
0.2
M2_69
0.2
M2_70
0.2
M2_71
0.2
M2_72
0.1
M2_73
0.1
M2_74
0.1
M2_75
0.1
M2_76
0.1
M2_77
0.1
M2_78
0.1
M2_79
0.1
M2_80
0.1
M2_81
0.1
M2_82
0.1
M2_83
0.1
M2_84
0.0
M2_85
0.0
M2_86
0.0
M2_87
0.0
M2_88
0.0
M2_89
0.0
M2_90
0.0
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The Human Protein Atlas project is funded
