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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

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  • EVOLUTION

  • DYNLL1
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:279.2 nTPM
GTEx:677.5 nTPM
FANTOM5:556.5 Scaled Tags Per Million
Macaque:214.7 nTPM
Pig:196.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.2
Sample id Sample description nTPM
Substantia nigra
nTPM: 279.2
1916 Female, age 42, unknown 336.3
1941 Male, age 53, unknown 329.9
2241 Male, age 72, unknown 323.0
1889 Female, age 72, unknown 317.9
1851 Male, age 51, unknown 313.6
2699 Male, age 18, unknown 287.5
2409 Female, age 72, unknown 257.1
2590 Female, age 75, unknown 237.9
2583 Male, age 75, right hemisphere 201.2
2665 Male, age 74, both hemispheres 187.3

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

677.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 677.5
Samples: 183

Max nTPM: 1731.0
Min nTPM: 242.9
Std nTPM: 207.6
Median nTPM: 641.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1731.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1542.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1402.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1344.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1286.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1175.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1116.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1098.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1094.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1080.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1046.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 1029.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1020.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1001.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 941.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 938.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 903.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 902.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 897.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 890.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 870.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 865.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 850.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 845.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 842.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 835.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 833.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 832.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 828.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 822.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 818.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 804.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 803.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 801.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 798.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 794.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 788.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 781.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 780.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 778.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 775.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 764.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 763.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 762.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 758.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 757.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 754.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 750.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 748.8
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 739.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 739.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 734.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 733.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 733.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 731.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 710.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 709.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 708.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 705.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 704.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 701.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 698.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 696.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 694.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 694.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 692.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 689.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 686.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 685.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 678.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 675.5
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 675.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 674.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 673.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 670.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 670.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 669.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 668.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 668.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 668.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 665.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 662.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 657.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 657.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 655.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 655.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 654.5
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 653.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 645.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 643.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 642.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 641.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 638.6
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 635.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 633.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 632.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 630.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 627.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 627.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 626.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 625.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 624.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 622.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 620.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 620.1
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 618.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 618.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 615.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 615.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 611.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 610.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 610.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 607.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 605.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 604.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 603.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 602.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 602.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 597.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 597.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 594.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 594.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 593.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 588.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 584.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 582.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 580.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 579.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 575.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 575.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 574.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 568.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 567.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 566.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 564.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 562.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 561.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 560.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 559.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 554.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 553.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 549.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 547.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 538.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 538.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 534.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 529.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 527.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 527.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 525.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 523.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 511.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 510.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 510.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 507.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 502.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 498.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 498.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 497.3
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 496.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 494.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 489.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 485.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 479.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 474.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 471.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 460.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 459.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 451.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 450.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 446.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 436.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 433.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 432.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 426.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 401.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 394.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 391.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 378.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 372.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 367.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 268.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 242.9
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

556.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 556.5
FF:10158-103A5 76 years, female 556.5

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 214.7
Samples: 1

Max nTPM: 214.7
Min nTPM: 214.7
Sample A 214.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 196.3
Samples: 3

Max nTPM: 247.4
Min nTPM: 163.9
Sample A Female 247.4
Sample B Female 163.9
Sample C Male 177.5

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