A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
262.4
nTPM
Monaco:
84.4
nTPM
Schmiedel:
128.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
262.4
HPA sample
nTPM
Classical monocyte nTPM: 51.1
Samples: 6
Max nTPM: 126.7
Min nTPM: 18.7
P10809_1003
24.5
P10809_1020
43.8
P10809_1039
126.7
P10809_1058
25.6
P10809_1080
18.7
P10809_1107
67.5
Intermediate monocyte nTPM: 68.0
Samples: 6
Max nTPM: 149.3
Min nTPM: 21.1
P10809_1004
57.8
P10809_1023
78.2
P10809_1042
68.8
P10809_1061
32.9
P10809_1081
21.1
P10809_1108
149.3
Non-classical monocyte nTPM: 262.4
Samples: 5
Max nTPM: 408.2
Min nTPM: 183.5
P10809_1005
183.5
P10809_1053
277.1
P10809_1072
246.7
P10809_1082
196.5
P10809_1109
408.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.4
Monaco sample
nTPM
Classical monocyte nTPM: 31.8
Samples: 4
Max nTPM: 38.9
Min nTPM: 26.1
RHH5313_R3680
26.1
RHH5221_R3593
27.3
RHH5250_R3622
38.9
RHH5279_R3651
35.0
Intermediate monocyte nTPM: 56.7
Samples: 4
Max nTPM: 84.4
Min nTPM: 32.5
RHH5314_R3681
84.4
RHH5222_R3594
32.5
RHH5251_R3623
60.2
RHH5280_R3652
49.8
Non-classical monocyte nTPM: 84.4
Samples: 4
Max nTPM: 137.4
Min nTPM: 38.5
RHH5315_R3682
137.4
RHH5223_R3595
38.5
RHH5252_R3624
98.5
RHH5281_R3653
63.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.8
Schmiedel sample id
TPM
Classical monocyte TPM: 42.3
Samples: 91
Max TPM: 63.1
Min TPM: 21.4
MONOCYTES_1
63.1
MONOCYTES_2
62.7
MONOCYTES_3
62.0
MONOCYTES_4
60.3
MONOCYTES_5
56.2
MONOCYTES_6
56.2
MONOCYTES_7
54.7
MONOCYTES_8
54.6
MONOCYTES_9
53.9
MONOCYTES_10
53.5
MONOCYTES_11
53.1
MONOCYTES_12
52.8
MONOCYTES_13
52.6
MONOCYTES_14
52.2
MONOCYTES_15
52.1
MONOCYTES_16
52.1
MONOCYTES_17
51.2
MONOCYTES_18
50.9
MONOCYTES_19
50.6
MONOCYTES_20
50.1
MONOCYTES_21
49.9
MONOCYTES_22
49.8
MONOCYTES_23
48.5
MONOCYTES_24
48.4
MONOCYTES_25
48.3
MONOCYTES_26
48.2
MONOCYTES_27
47.1
MONOCYTES_28
47.0
MONOCYTES_29
46.6
MONOCYTES_30
46.6
MONOCYTES_31
46.6
MONOCYTES_32
46.3
MONOCYTES_33
46.1
MONOCYTES_34
45.5
MONOCYTES_35
45.4
MONOCYTES_36
45.3
MONOCYTES_37
45.3
MONOCYTES_38
45.1
MONOCYTES_39
45.0
MONOCYTES_40
45.0
MONOCYTES_41
43.8
MONOCYTES_42
43.7
MONOCYTES_43
43.7
MONOCYTES_44
43.6
MONOCYTES_45
43.6
MONOCYTES_46
43.5
MONOCYTES_47
43.3
MONOCYTES_48
43.3
MONOCYTES_49
43.0
MONOCYTES_50
42.8
MONOCYTES_51
42.5
MONOCYTES_52
42.1
MONOCYTES_53
41.3
MONOCYTES_54
41.0
MONOCYTES_55
41.0
MONOCYTES_56
40.4
MONOCYTES_57
40.3
MONOCYTES_58
40.0
MONOCYTES_59
40.0
MONOCYTES_60
39.8
MONOCYTES_61
37.3
MONOCYTES_62
37.2
MONOCYTES_63
36.3
MONOCYTES_64
36.1
MONOCYTES_65
35.8
MONOCYTES_66
35.4
MONOCYTES_67
34.9
MONOCYTES_68
34.8
MONOCYTES_69
34.6
MONOCYTES_70
34.3
MONOCYTES_71
34.2
MONOCYTES_72
34.2
MONOCYTES_73
33.6
MONOCYTES_74
33.4
MONOCYTES_75
32.8
MONOCYTES_76
31.7
MONOCYTES_77
31.3
MONOCYTES_78
30.8
MONOCYTES_79
30.8
MONOCYTES_80
30.0
MONOCYTES_81
29.9
MONOCYTES_82
29.9
MONOCYTES_83
29.7
MONOCYTES_84
29.4
MONOCYTES_85
29.0
MONOCYTES_86
27.3
MONOCYTES_87
26.0
MONOCYTES_88
25.0
MONOCYTES_89
23.4
MONOCYTES_90
23.2
MONOCYTES_91
21.4
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Non-classical monocyte TPM: 128.8
Samples: 90
Max TPM: 291.5
Min TPM: 42.5
M2_1
291.5
M2_2
289.4
M2_3
226.9
M2_4
219.7
M2_5
203.1
M2_6
189.3
M2_7
186.0
M2_8
183.0
M2_9
176.3
M2_10
174.5
M2_11
173.8
M2_12
172.1
M2_13
167.9
M2_14
167.7
M2_15
164.6
M2_16
161.8
M2_17
159.4
M2_18
158.8
M2_19
157.7
M2_20
156.7
M2_21
154.3
M2_22
153.1
M2_23
150.4
M2_24
148.0
M2_25
145.8
M2_26
145.0
M2_27
144.0
M2_28
144.0
M2_29
143.1
M2_30
141.6
M2_31
140.2
M2_32
140.0
M2_33
139.2
M2_34
138.7
M2_35
137.9
M2_36
135.0
M2_37
134.9
M2_38
134.7
M2_39
134.5
M2_40
134.2
M2_41
134.1
M2_42
133.7
M2_43
132.7
M2_44
132.2
M2_45
131.8
M2_46
131.6
M2_47
131.1
M2_48
130.9
M2_49
130.7
M2_50
123.6
M2_51
119.8
M2_52
117.7
M2_53
117.4
M2_54
117.1
M2_55
116.2
M2_56
114.6
M2_57
112.2
M2_58
112.0
M2_59
111.9
M2_60
107.6
M2_61
106.6
M2_62
105.7
M2_63
104.6
M2_64
102.6
M2_65
101.9
M2_66
101.3
M2_67
100.6
M2_68
99.9
M2_69
95.5
M2_70
94.5
M2_71
92.9
M2_72
92.8
M2_73
92.5
M2_74
86.0
M2_75
86.0
M2_76
85.9
M2_77
82.9
M2_78
81.0
M2_79
80.9
M2_80
78.7
M2_81
76.9
M2_82
75.7
M2_83
71.0
M2_84
70.9
M2_85
68.4
M2_86
66.0
M2_87
57.9
M2_88
56.8
M2_89
54.5
M2_90
42.5
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