A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.5
nTPM
Monaco:
36.8
nTPM
Schmiedel:
91.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.5
HPA sample
nTPM
Classical monocyte nTPM: 2.9
Samples: 6
Max nTPM: 4.2
Min nTPM: 2.0
P10809_1003
3.3
P10809_1020
2.4
P10809_1039
2.0
P10809_1058
2.6
P10809_1080
4.2
P10809_1107
3.0
Intermediate monocyte nTPM: 4.5
Samples: 6
Max nTPM: 8.4
Min nTPM: 1.8
P10809_1004
6.0
P10809_1023
1.8
P10809_1042
3.7
P10809_1061
8.4
P10809_1081
4.1
P10809_1108
2.8
Non-classical monocyte nTPM: 3.3
Samples: 5
Max nTPM: 5.1
Min nTPM: 0.7
P10809_1005
5.1
P10809_1053
4.0
P10809_1072
0.7
P10809_1082
3.6
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.8
Monaco sample
nTPM
Classical monocyte nTPM: 36.8
Samples: 4
Max nTPM: 46.3
Min nTPM: 26.2
RHH5313_R3680
43.8
RHH5221_R3593
46.3
RHH5250_R3622
26.2
RHH5279_R3651
30.8
Intermediate monocyte nTPM: 36.2
Samples: 4
Max nTPM: 47.6
Min nTPM: 27.6
RHH5314_R3681
38.7
RHH5222_R3594
47.6
RHH5251_R3623
27.6
RHH5280_R3652
30.8
Non-classical monocyte nTPM: 32.0
Samples: 4
Max nTPM: 51.8
Min nTPM: 18.0
RHH5315_R3682
39.4
RHH5223_R3595
51.8
RHH5252_R3624
18.9
RHH5281_R3653
18.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.3
Schmiedel sample id
TPM
Classical monocyte TPM: 91.3
Samples: 91
Max TPM: 129.3
Min TPM: 59.6
MONOCYTES_1
129.3
MONOCYTES_2
126.7
MONOCYTES_3
124.7
MONOCYTES_4
116.0
MONOCYTES_5
115.0
MONOCYTES_6
113.1
MONOCYTES_7
111.6
MONOCYTES_8
111.5
MONOCYTES_9
111.5
MONOCYTES_10
110.2
MONOCYTES_11
109.8
MONOCYTES_12
109.3
MONOCYTES_13
108.7
MONOCYTES_14
108.6
MONOCYTES_15
107.8
MONOCYTES_16
107.8
MONOCYTES_17
107.4
MONOCYTES_18
106.0
MONOCYTES_19
105.3
MONOCYTES_20
103.1
MONOCYTES_21
100.4
MONOCYTES_22
100.2
MONOCYTES_23
99.2
MONOCYTES_24
98.5
MONOCYTES_25
98.4
MONOCYTES_26
97.9
MONOCYTES_27
97.5
MONOCYTES_28
97.3
MONOCYTES_29
96.9
MONOCYTES_30
96.9
MONOCYTES_31
96.6
MONOCYTES_32
96.6
MONOCYTES_33
96.5
MONOCYTES_34
96.3
MONOCYTES_35
95.8
MONOCYTES_36
95.2
MONOCYTES_37
94.6
MONOCYTES_38
94.5
MONOCYTES_39
92.6
MONOCYTES_40
92.1
MONOCYTES_41
91.6
MONOCYTES_42
91.5
MONOCYTES_43
91.1
MONOCYTES_44
91.0
MONOCYTES_45
90.3
MONOCYTES_46
90.1
MONOCYTES_47
89.3
MONOCYTES_48
89.2
MONOCYTES_49
88.9
MONOCYTES_50
88.7
MONOCYTES_51
88.5
MONOCYTES_52
88.1
MONOCYTES_53
87.9
MONOCYTES_54
87.6
MONOCYTES_55
87.1
MONOCYTES_56
87.0
MONOCYTES_57
86.5
MONOCYTES_58
85.7
MONOCYTES_59
85.1
MONOCYTES_60
84.9
MONOCYTES_61
84.5
MONOCYTES_62
84.3
MONOCYTES_63
83.5
MONOCYTES_64
83.2
MONOCYTES_65
83.2
MONOCYTES_66
82.9
MONOCYTES_67
82.7
MONOCYTES_68
80.6
MONOCYTES_69
80.1
MONOCYTES_70
80.0
MONOCYTES_71
80.0
MONOCYTES_72
79.7
MONOCYTES_73
78.9
MONOCYTES_74
78.7
MONOCYTES_75
77.3
MONOCYTES_76
76.9
MONOCYTES_77
76.7
MONOCYTES_78
75.2
MONOCYTES_79
75.1
MONOCYTES_80
74.6
MONOCYTES_81
74.6
MONOCYTES_82
74.6
MONOCYTES_83
74.5
MONOCYTES_84
73.2
MONOCYTES_85
72.7
MONOCYTES_86
72.4
MONOCYTES_87
68.6
MONOCYTES_88
65.6
MONOCYTES_89
65.6
MONOCYTES_90
63.0
MONOCYTES_91
59.6
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Non-classical monocyte TPM: 84.0
Samples: 90
Max TPM: 123.9
Min TPM: 48.8
M2_1
123.9
M2_2
123.1
M2_3
121.9
M2_4
119.8
M2_5
119.0
M2_6
115.1
M2_7
114.5
M2_8
113.1
M2_9
109.6
M2_10
106.9
M2_11
105.3
M2_12
103.8
M2_13
103.2
M2_14
101.8
M2_15
99.5
M2_16
98.9
M2_17
98.7
M2_18
98.3
M2_19
97.7
M2_20
97.7
M2_21
96.3
M2_22
96.2
M2_23
96.2
M2_24
96.1
M2_25
95.6
M2_26
94.1
M2_27
93.7
M2_28
93.7
M2_29
93.6
M2_30
91.0
M2_31
91.0
M2_32
89.5
M2_33
89.4
M2_34
89.0
M2_35
88.8
M2_36
87.9
M2_37
87.8
M2_38
87.6
M2_39
87.2
M2_40
86.3
M2_41
85.5
M2_42
85.4
M2_43
83.4
M2_44
82.8
M2_45
82.7
M2_46
82.7
M2_47
81.9
M2_48
81.5
M2_49
81.3
M2_50
80.7
M2_51
80.5
M2_52
80.5
M2_53
79.6
M2_54
79.2
M2_55
78.6
M2_56
78.5
M2_57
78.3
M2_58
78.2
M2_59
77.4
M2_60
76.5
M2_61
75.7
M2_62
75.6
M2_63
75.5
M2_64
74.6
M2_65
73.7
M2_66
73.6
M2_67
73.4
M2_68
69.8
M2_69
69.7
M2_70
68.7
M2_71
68.4
M2_72
67.2
M2_73
65.8
M2_74
65.3
M2_75
65.1
M2_76
65.1
M2_77
64.7
M2_78
64.6
M2_79
62.5
M2_80
62.0
M2_81
61.3
M2_82
61.0
M2_83
59.6
M2_84
59.3
M2_85
58.5
M2_86
55.3
M2_87
54.6
M2_88
53.2
M2_89
51.6
M2_90
48.8
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