A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.9
nTPM
Monaco:
151.3
nTPM
Schmiedel:
59.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.9
HPA sample
nTPM
Classical monocyte nTPM: 67.2
Samples: 6
Max nTPM: 84.5
Min nTPM: 48.0
P10809_1003
68.8
P10809_1020
84.5
P10809_1039
77.6
P10809_1058
48.0
P10809_1080
68.7
P10809_1107
55.8
Intermediate monocyte nTPM: 70.9
Samples: 6
Max nTPM: 93.6
Min nTPM: 51.9
P10809_1004
64.3
P10809_1023
93.6
P10809_1042
74.5
P10809_1061
79.1
P10809_1081
51.9
P10809_1108
62.2
Non-classical monocyte nTPM: 63.8
Samples: 5
Max nTPM: 86.1
Min nTPM: 44.3
P10809_1005
67.1
P10809_1053
86.1
P10809_1072
60.9
P10809_1082
44.3
P10809_1109
60.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.3
Monaco sample
nTPM
Classical monocyte nTPM: 151.4
Samples: 4
Max nTPM: 188.7
Min nTPM: 122.0
RHH5313_R3680
146.4
RHH5221_R3593
188.7
RHH5250_R3622
148.3
RHH5279_R3651
122.0
Intermediate monocyte nTPM: 142.3
Samples: 4
Max nTPM: 178.0
Min nTPM: 108.4
RHH5314_R3681
112.2
RHH5222_R3594
178.0
RHH5251_R3623
170.7
RHH5280_R3652
108.4
Non-classical monocyte nTPM: 140.3
Samples: 4
Max nTPM: 150.9
Min nTPM: 114.5
RHH5315_R3682
149.2
RHH5223_R3595
150.9
RHH5252_R3624
146.5
RHH5281_R3653
114.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.3
Schmiedel sample id
TPM
Classical monocyte TPM: 49.0
Samples: 91
Max TPM: 57.5
Min TPM: 38.2
MONOCYTES_1
57.5
MONOCYTES_2
57.4
MONOCYTES_3
57.3
MONOCYTES_4
57.1
MONOCYTES_5
56.6
MONOCYTES_6
56.2
MONOCYTES_7
55.2
MONOCYTES_8
54.8
MONOCYTES_9
54.4
MONOCYTES_10
54.4
MONOCYTES_11
54.2
MONOCYTES_12
53.8
MONOCYTES_13
53.1
MONOCYTES_14
53.1
MONOCYTES_15
53.1
MONOCYTES_16
52.7
MONOCYTES_17
52.6
MONOCYTES_18
52.6
MONOCYTES_19
52.4
MONOCYTES_20
52.3
MONOCYTES_21
52.0
MONOCYTES_22
51.9
MONOCYTES_23
51.7
MONOCYTES_24
51.7
MONOCYTES_25
51.6
MONOCYTES_26
51.4
MONOCYTES_27
51.2
MONOCYTES_28
50.9
MONOCYTES_29
50.8
MONOCYTES_30
50.7
MONOCYTES_31
50.5
MONOCYTES_32
50.4
MONOCYTES_33
50.2
MONOCYTES_34
50.1
MONOCYTES_35
50.0
MONOCYTES_36
49.9
MONOCYTES_37
49.9
MONOCYTES_38
49.5
MONOCYTES_39
49.0
MONOCYTES_40
48.8
MONOCYTES_41
48.8
MONOCYTES_42
48.8
MONOCYTES_43
48.8
MONOCYTES_44
48.8
MONOCYTES_45
48.7
MONOCYTES_46
48.7
MONOCYTES_47
48.4
MONOCYTES_48
48.4
MONOCYTES_49
48.4
MONOCYTES_50
48.3
MONOCYTES_51
48.2
MONOCYTES_52
48.1
MONOCYTES_53
48.1
MONOCYTES_54
48.1
MONOCYTES_55
48.0
MONOCYTES_56
48.0
MONOCYTES_57
47.9
MONOCYTES_58
47.9
MONOCYTES_59
47.8
MONOCYTES_60
47.6
MONOCYTES_61
47.3
MONOCYTES_62
47.2
MONOCYTES_63
47.2
MONOCYTES_64
47.1
MONOCYTES_65
47.1
MONOCYTES_66
47.1
MONOCYTES_67
46.9
MONOCYTES_68
46.9
MONOCYTES_69
46.8
MONOCYTES_70
46.3
MONOCYTES_71
46.2
MONOCYTES_72
46.2
MONOCYTES_73
46.1
MONOCYTES_74
46.1
MONOCYTES_75
46.1
MONOCYTES_76
45.7
MONOCYTES_77
45.6
MONOCYTES_78
45.3
MONOCYTES_79
45.1
MONOCYTES_80
44.9
MONOCYTES_81
44.8
MONOCYTES_82
44.8
MONOCYTES_83
44.3
MONOCYTES_84
43.9
MONOCYTES_85
43.8
MONOCYTES_86
42.9
MONOCYTES_87
41.7
MONOCYTES_88
39.5
MONOCYTES_89
38.8
MONOCYTES_90
38.4
MONOCYTES_91
38.2
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Non-classical monocyte TPM: 59.3
Samples: 90
Max TPM: 71.4
Min TPM: 50.6
M2_1
71.4
M2_2
70.5
M2_3
67.1
M2_4
66.3
M2_5
66.1
M2_6
65.8
M2_7
65.6
M2_8
64.2
M2_9
64.2
M2_10
64.1
M2_11
64.1
M2_12
63.6
M2_13
63.5
M2_14
63.0
M2_15
62.9
M2_16
62.7
M2_17
62.6
M2_18
62.5
M2_19
62.4
M2_20
62.4
M2_21
62.4
M2_22
62.3
M2_23
62.1
M2_24
62.1
M2_25
61.5
M2_26
61.4
M2_27
61.1
M2_28
61.1
M2_29
61.0
M2_30
60.8
M2_31
60.7
M2_32
60.7
M2_33
60.6
M2_34
60.6
M2_35
60.2
M2_36
60.2
M2_37
60.0
M2_38
59.9
M2_39
59.7
M2_40
59.7
M2_41
59.7
M2_42
59.7
M2_43
59.3
M2_44
58.8
M2_45
58.8
M2_46
58.8
M2_47
58.7
M2_48
58.6
M2_49
58.5
M2_50
58.4
M2_51
58.3
M2_52
58.3
M2_53
58.3
M2_54
58.1
M2_55
58.0
M2_56
57.9
M2_57
57.8
M2_58
57.7
M2_59
57.6
M2_60
57.5
M2_61
57.5
M2_62
57.5
M2_63
57.5
M2_64
57.5
M2_65
57.3
M2_66
57.1
M2_67
57.1
M2_68
57.0
M2_69
57.0
M2_70
56.8
M2_71
56.8
M2_72
56.6
M2_73
56.5
M2_74
56.0
M2_75
56.0
M2_76
55.9
M2_77
55.9
M2_78
55.7
M2_79
55.2
M2_80
54.8
M2_81
53.9
M2_82
53.8
M2_83
53.2
M2_84
52.9
M2_85
52.5
M2_86
51.9
M2_87
51.9
M2_88
51.8
M2_89
51.3
M2_90
50.6
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